| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,972,711 – 3,972,848 |
| Length | 137 |
| Max. P | 0.911064 |
| Location | 3,972,711 – 3,972,817 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 98.11 |
| Mean single sequence MFE | -23.66 |
| Consensus MFE | -24.22 |
| Energy contribution | -23.98 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.09 |
| Structure conservation index | 1.02 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572334 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3972711 106 + 23771897 AAACGAAACGCAAAGCAAUAUUUAGUCGGGUUUUGCGGACCGGUUCA-AGUGGGAGCGGUUCCAUAGCGAAUGUUAACAUAACCGAAAACAACAAGGACCAACUCAA ....((..((((((((.............))))))))....(((((.-..((....(((((...((((....))))....)))))....))....)))))...)).. ( -24.02) >DroSec_CAF1 45031 105 + 1 AAACGAAACGCAAAGCAAUAUUUAGUCGGGUUUUGCGAACCGGUUCA-AGUGGGAGCGGUUCCAUAGCGAAUGUUAACA-AACCGAAAACAACAAGGACCAACUCAA ....((..((((((((.............))))))))....(((((.-..((....(((((...((((....))))...-)))))....))....)))))...)).. ( -24.52) >DroSim_CAF1 48513 105 + 1 AAACGAAACGCAAAGCAAUAUUUAGUCGGGUUUUGCGAACCGGUUCA-AGUGGGAGCGGUUCCAUAGCGAAUGUUAACA-AACCGAAAACAACAAGGACCAACUCAA ....((..((((((((.............))))))))....(((((.-..((....(((((...((((....))))...-)))))....))....)))))...)).. ( -24.52) >DroEre_CAF1 46167 105 + 1 AAACGAAACGCAAAGCAAUAUUUAGUCGGGUUUUGCGGACCGGUUCA-AGUGGGAGCGGUUCCAUAGCGAAUGUUAACA-AACUGAAAACAACAAGGACCAACUCAA ....((..((((((((.............))))))))....(((((.-..((....(((((...((((....))))...-)))))....))....)))))...)).. ( -22.52) >DroYak_CAF1 48312 106 + 1 AAACGAAACGCAAAGCAAUAUUUAGUCGGGUUUUGCGAACCGGUUCAAAGUGGGAGCGGUUCCAUAGCGAAUGUUAACA-AACUGAAAACAACAAGGACCAACUCAA ....((..((((((((.............))))))))....(((((....((....(((((...((((....))))...-)))))....))....)))))...)).. ( -22.72) >consensus AAACGAAACGCAAAGCAAUAUUUAGUCGGGUUUUGCGAACCGGUUCA_AGUGGGAGCGGUUCCAUAGCGAAUGUUAACA_AACCGAAAACAACAAGGACCAACUCAA ....((..((((((((.............))))))))....(((((....((....(((((...((((....))))....)))))....))....)))))...)).. (-24.22 = -23.98 + -0.24)
| Location | 3,972,745 – 3,972,848 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 97.67 |
| Mean single sequence MFE | -27.82 |
| Consensus MFE | -26.08 |
| Energy contribution | -25.80 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.911064 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3972745 103 + 23771897 GCGGACCGGUUCA-AGUGGGAGCGGUUCCAUAGCGAAUGUUAACAUAACCGAAAACAACAAGGACCAACUCAAACUCCCCGAGAACUGGUUGUGUAAGCCUCAU ((((((((((((.-.(.((((((((((...((((....))))....))))).........((......))....))))))..))))))))).)))......... ( -28.10) >DroSec_CAF1 45065 101 + 1 GCGAACCGGUUCA-AGUGGGAGCGGUUCCAUAGCGAAUGUUAACA-AACCGAAAACAACAAGGACCAACUCAAACUC-CCGAGAACUGGUUGUGUAAGCCUCAU ((((((((((((.-..(((((((((((...((((....))))...-))))).........((......))....)))-))).))))))))).)))......... ( -29.10) >DroSim_CAF1 48547 102 + 1 GCGAACCGGUUCA-AGUGGGAGCGGUUCCAUAGCGAAUGUUAACA-AACCGAAAACAACAAGGACCAACUCAAACUCCCCGAGAACUGGUUGUGUAAGCCUCAU ((((((((((((.-.(.((((((((((...((((....))))...-))))).........((......))....))))))..))))))))).)))......... ( -29.20) >DroEre_CAF1 46201 102 + 1 GCGGACCGGUUCA-AGUGGGAGCGGUUCCAUAGCGAAUGUUAACA-AACUGAAAACAACAAGGACCAACUCAAACUCCCCGAGAACUGGUUGUGUAAGCCUCAU ((((((((((((.-.(.((((((((((...((((....))))...-))))).........((......))....))))))..))))))))).)))......... ( -26.60) >DroYak_CAF1 48346 103 + 1 GCGAACCGGUUCAAAGUGGGAGCGGUUCCAUAGCGAAUGUUAACA-AACUGAAAACAACAAGGACCAACUCAAACUCCCCGAGAACUGGUUGUGUAAGCCUCAU ((((((((((((...(.((((((((((...((((....))))...-))))).........((......))....))))))..))))))))).)))......... ( -26.10) >consensus GCGAACCGGUUCA_AGUGGGAGCGGUUCCAUAGCGAAUGUUAACA_AACCGAAAACAACAAGGACCAACUCAAACUCCCCGAGAACUGGUUGUGUAAGCCUCAU ((((((((((((...(.((((((((((...((((....))))....))))).........((......))....))))))..))))))))).)))......... (-26.08 = -25.80 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:41 2006