Locus 1362

Sequence ID 3L_DroMel_CAF1
Location 3,970,634 – 3,970,724
Length 90
Max. P 0.842501
window2119

overview

Window 9

Location 3,970,634 – 3,970,724
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 81.48
Mean single sequence MFE -36.53
Consensus MFE -23.95
Energy contribution -24.32
Covariance contribution 0.36
Combinations/Pair 1.20
Mean z-score -2.35
Structure conservation index 0.66
SVM decision value 0.76
SVM RNA-class probability 0.842501
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3970634 90 + 23771897
ACUUGCCAACUC-UCGAGGCGCAUGCGCAUCUGCGCAGCACGUCAUCGAUUGCCGAACUGGCUGCAGCGGCCAGUGUGGUAAAUGAGCAAC
..((((((....-((((((((..(((((....)))))...)))).))))((((((.((((((((...)))))))).)))))).)).)))). ( -40.70)
>DroVir_CAF1 38976 84 + 1
-------GCCAUAUGGAGGCGCAUGCGCAUGUGCGGAGCACGUCAUCGAUUGCCGAACUGGCGGCUGCGGCCAGCGCAGUUAACGAACAAC
-------(((.......)))((.(((((.((.((.((((.((((((((.....)))..)))))))).).)))))))))))........... ( -29.70)
>DroPse_CAF1 44628 90 + 1
ACUCCGCGUCCU-UCGAGGCGCAUGCGCAUCUACGGAGCACGUCAUCGAUUGCCGAAUUGGCUGCUGCAGCCAGCGCGGUGAACGAACAAC
.....((((.((-(((((..((....))..)).))))).))))..(((.(..(((..(((((((...)))))))..)))..).)))..... ( -35.10)
>DroGri_CAF1 49558 85 + 1
-----CCGUUGC-UGGAGGCGCAUGCGCUGGUGAGAAGCACCUCAUCGAUUGCCGAACUGGCGGCAGCAGCCAGCGUGGUAAACGAACAAC
-----..((((.-..((((((....))))((((.....)))))).(((.((((((..(((((.......)))))..)))))).))).)))) ( -31.40)
>DroEre_CAF1 44033 90 + 1
ACUUGCCAACUC-UCGAGGCGCAUGCGCAUCUGCGCAGCACGUCAUCGAUUGCCGAGCUGGCUGCAGCGGCCAGUGUGGUAAAUGAGCAAC
..((((((....-((((((((..(((((....)))))...)))).))))((((((.((((((((...)))))))).)))))).)).)))). ( -41.00)
>DroYak_CAF1 46204 90 + 1
ACUUGCCAACUC-UCGAGACGCAUGCGCAUCUGCGCAGCACGUCAUCGAUUGCCGAACUGGCUGCAGCGGCCAGUGUGGUAAAUGAGCAAC
..((((((....-((((((((..(((((....)))))...)))).))))((((((.((((((((...)))))))).)))))).)).)))). ( -41.30)
>consensus
ACUUGCCAACUC_UCGAGGCGCAUGCGCAUCUGCGCAGCACGUCAUCGAUUGCCGAACUGGCUGCAGCGGCCAGCGUGGUAAACGAACAAC
...............((.(.((.(.(((....))).))).).)).(((.((((((..(((((((...)))))))..)))))).)))..... (-23.95 = -24.32 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:37 2006