Locus 1361

Sequence ID 3L_DroMel_CAF1
Location 3,967,426 – 3,967,538
Length 112
Max. P 0.990504
window2118

overview

Window 8

Location 3,967,426 – 3,967,538
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 96.40
Mean single sequence MFE -10.90
Consensus MFE -10.90
Energy contribution -10.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.25
Structure conservation index 1.00
SVM decision value 2.22
SVM RNA-class probability 0.990504
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3967426 112 + 23771897
CUCUCAUAAGCAUUCAAGAGUUGCUUACGUUCGGUUCGUUCGCAUUUCUUCUCUAUCUUAUAUAAUAUUAUAUU-UUCUCCUAAAUCAAUUUUUUCAC--UACCAA-----CAACAACAA
.....(((((.....(((((.(((..(((.......)))..))).)))))......))))).............-.......................--......-----......... ( -10.90)
>DroVir_CAF1 35724 112 + 1
UUCUCAUAAGCAUUCAAGAGUUGCUUACGUUCGGUUCGUUCGCAUUUCUUCUCUAUCUUAUAUAAUAUUAUAUU-UUCUCCUAAAUCAAUUUUUUCAC--UACCAA-----CAACAAUAA
.....(((((.....(((((.(((..(((.......)))..))).)))))......))))).............-.......................--......-----......... ( -10.90)
>DroGri_CAF1 46443 118 + 1
AUCUCAUAAGCAUUCAAGAGUUGCUUACGUUCGGUUCGUUCGCAUUUCUUCUCUAUCUUAUAUAAUAUUAUAUUUUUCUCCUAAAUCAAUUUUUUCAC--UACCAACACAACAACAACAA
.....(((((.....(((((.(((..(((.......)))..))).)))))......))))).....................................--.................... ( -10.90)
>DroWil_CAF1 50270 113 + 1
UUCUCAUAAGCAUUCAAGAGUUGCUUACGUUCGGUUCGUUCGCAUUUCUUCUCUAUCUUAUAUAAUAUUAUAUUUUUCUCCUAAAUCAAUUUUUUCAC--UACCAA-----CAACAACAA
.....(((((.....(((((.(((..(((.......)))..))).)))))......))))).....................................--......-----......... ( -10.90)
>DroMoj_CAF1 41240 114 + 1
UUCUCAUAAGCAUUCAAGAGUUGCUUACGUUCGGUUCGUUCGCAUUUCUUCUCUAUCUUAUAUAAUAUUAUAUU-UUCUCCUAAAUCAAUUUUUUCACUCUACCAA-----CAACAAUAA
.....(((((.....(((((.(((..(((.......)))..))).)))))......))))).............-...............................-----......... ( -10.90)
>DroAna_CAF1 42503 112 + 1
CUCUCAUAAGCAUUCAAGAGUUGCUUACGUUCGGUUCGUUCGCAUUUCUUCUCUAUCUUAUAUAAUAUUAUAUU-UUCUCCUAAAUCAAUUUUUUCAC--UACCAA-----CAACAACAA
.....(((((.....(((((.(((..(((.......)))..))).)))))......))))).............-.......................--......-----......... ( -10.90)
>consensus
UUCUCAUAAGCAUUCAAGAGUUGCUUACGUUCGGUUCGUUCGCAUUUCUUCUCUAUCUUAUAUAAUAUUAUAUU_UUCUCCUAAAUCAAUUUUUUCAC__UACCAA_____CAACAACAA
.....(((((.....(((((.(((..(((.......)))..))).)))))......)))))........................................................... (-10.90 = -10.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:36 2006