| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,959,877 – 3,959,969 |
| Length | 92 |
| Max. P | 0.996433 |
| Location | 3,959,877 – 3,959,969 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 70.67 |
| Mean single sequence MFE | -24.56 |
| Consensus MFE | -20.86 |
| Energy contribution | -20.54 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.85 |
| SVM decision value | 2.70 |
| SVM RNA-class probability | 0.996433 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3959877 92 + 23771897 ---GGUUUUAAAUGAAGAUUUCUAUUUGAUUGCCCUCCAUUGUGUUUGCUUGGCACGGAGUGUAUCCAUCUACGUGGAUGAGCUCCAUGUGUCGC ---(((.(((((((........)))))))..))).................((((((((((.(((((((....))))))).)))))..))))).. ( -26.60) >DroSec_CAF1 32345 92 + 1 ---GAUUUUAAAUGAAGAUUUCUAUUUGAUUGCCCCCCAUUGUGUUUGUUUGGCACGGAGUGUAUCCAUCUACGUGGAUGAGCUCCAUGUGUCGC ---....(((((((........)))))))..((..(.(((.(((((.....)))))(((((.(((((((....))))))).)))))))).)..)) ( -23.10) >DroSim_CAF1 35761 92 + 1 ---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUUGGCACGGAGUGUAUCCAUCUACGUGGAUGAGCUCCAUGUGUCGC ---................................................((((((((((.(((((((....))))))).)))))..))))).. ( -21.60) >DroEre_CAF1 33274 95 + 1 ACUCCUUUUGACAGCGGAUUCCUAUGCGACUGCCCCCAAUUGUGUUCGCUUGGUACGGAGUGUAUCCAUCUACGUGGAUGAGCUCCAUGUGUCGC .........((((..(....((...((((..((........))..))))..))..)(((((.(((((((....))))))).)))))...)))).. ( -27.90) >DroYak_CAF1 34530 95 + 1 ACCCCUUUUGAUUAAAGAUUCCUAUUUAAAUGCCCCCAAUUGUGUCUGUUUGGCGCGGAGUGUAUCCAUCUACGUGGAUGAGCUCCAUGUGUCGC ....((((.....))))..............((..(((...(((((.....)))))(((((.(((((((....))))))).))))).)).)..)) ( -23.60) >consensus ___CCUUUUAAAUGAAGAUUCCUAUUUGAUUGCCCCCAAUUGUGUUUGCUUGGCACGGAGUGUAUCCAUCUACGUGGAUGAGCUCCAUGUGUCGC ...................................................((((((((((.(((((((....))))))).)))))..))))).. (-20.86 = -20.54 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:33 2006