| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,956,344 – 3,956,449 |
| Length | 105 |
| Max. P | 0.998433 |
| Location | 3,956,344 – 3,956,449 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 78.73 |
| Mean single sequence MFE | -16.80 |
| Consensus MFE | -14.54 |
| Energy contribution | -14.60 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.87 |
| SVM decision value | 3.10 |
| SVM RNA-class probability | 0.998433 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3956344 105 + 23771897 AAAAACAAAAGAGUGUGUGACAAAUGAUGGCUACAUAAUACAGCCAGAGCUCGCAGCAUUCGAAAAAGUUUUCAAUGAAAUCGGGCAGGCAAAAAAAAAAAAACA .............((((((.((.....))..)))))).....(((...(((((...((((.((((....))))))))....))))).)))............... ( -18.60) >DroSec_CAF1 28822 79 + 1 GAAAACAAAAGAGUGUGUGACAAAUGAUGGCU-CACAAUAAAGCCAGAACUCGCAGCAUUCGAAAAAGUUUUCAAAAAAA------------------------- ((((((....((((((((((.......(((((-........)))))....))))).)))))......)))))).......------------------------- ( -21.00) >DroSim_CAF1 32095 80 + 1 AAAAACAAAAGAGUGUGUGACAAAUGAUGGCUACAUAAUAAAGCCAGAACUCGCAGCAUUCGAAAAAGUUUUCAAUGAAU------------------------- ..........((((((((((.......(((((.........)))))....))))).)))))((((....)))).......------------------------- ( -16.70) >DroEre_CAF1 29745 87 + 1 AAAAACAAAAGAGUGUGUGACAAAUGAUGGCUACAUAAUGAAACCAGAACUCACAGCAUUCAAAAAAGUUUUCAAUGAAAUCCAGCU------------------ ..........((((((((((.......(((.............)))....))))).)))))..........................------------------ ( -10.92) >consensus AAAAACAAAAGAGUGUGUGACAAAUGAUGGCUACAUAAUAAAGCCAGAACUCGCAGCAUUCGAAAAAGUUUUCAAUGAAA_________________________ .(((((....((((((((((.......(((((.........)))))....))))).)))))......)))))................................. (-14.54 = -14.60 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:27 2006