| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,951,366 – 3,951,458 |
| Length | 92 |
| Max. P | 0.754447 |
| Location | 3,951,366 – 3,951,458 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.78 |
| Mean single sequence MFE | -25.18 |
| Consensus MFE | -17.14 |
| Energy contribution | -16.42 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.754447 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3951366 92 + 23771897 UUGAAGUAAACAAAACCACUUCAAUGGCGGCUACUCAACUUGAUUAGUUUGAUCAAGAGGUAAGCUCA-----------CUUUCGGUCAGAUUUAUUGGCCGA----------------- (((((((..........))))))).(..(((((((...(((((((.....))))))).))).))))..-----------)..((((((((.....))))))))----------------- ( -24.10) >DroPse_CAF1 24355 120 + 1 UUGGAGUAAACAACACCACUCCAAUGGCGGCUACUCAAGUUGAUUAGUUUGAUCAAGAGGUAUGUCCAGCUCUGGCUAUAUUCUGGUUACAUUUAUUGCACAGACUGCGGUCCAUGGCCU (((((((..........))))))).((((((((.((.....)).)))))((((((.(((.((((.(((....))).)))))))))))))(((..((((((.....))))))..)))))). ( -30.30) >DroSec_CAF1 23968 92 + 1 UUGAUGUAAACAAAACCACUUCAAUGGCGGCUACUCAACUUGAUUAGUUUGAUCAAGAGGUAAGCUCA-----------CUUUCGGUCAGAUUUAUUGGCCGA----------------- ...............(((......))).(((((((...(((((((.....))))))).))).))))..-----------...((((((((.....))))))))----------------- ( -20.40) >DroYak_CAF1 25511 92 + 1 UUGAAGUAAACAAAACCACUUCAAUGGCGGCUACUCAACUUGAUUAGUUUGAUCAAGAGGUAAGCUCA-----------CUUUCGGUUAAAUUUAUUGCCCGA----------------- (((((((..........))))))).(..(((((((...(((((((.....))))))).))).))))..-----------)..((((.(((.....))).))))----------------- ( -18.70) >DroAna_CAF1 24405 91 + 1 UUGAAGUAAACAAAACCACUUCAAUGGCGGCUACUCAACUUGAUUAGUUUGAUCAAGAGGUA-GCUAG-----------AUUCUGGUCAGAUUUAUUGCCCAA----------------- (((((((..........))))))).((((((((((...(((((((.....))))))).))))-))).(-----------((....))).........)))...----------------- ( -24.90) >DroPer_CAF1 24349 120 + 1 UUGGAGUAAACAACACCACUCCAAUGGCGGCUACUCAAGUUGAUUAGUUUGAUCAAGAGGUAUGUCCAGCUCUGGCUAUAUUCUGGUUACAUUUAUUGCACAGACUGUGGUCCAUGGCCU (((((((..........)))))))(((((....(((...((((((.....)))))))))...)).)))(((.((((((((.((((((..........)).)))).))))).))).))).. ( -32.70) >consensus UUGAAGUAAACAAAACCACUUCAAUGGCGGCUACUCAACUUGAUUAGUUUGAUCAAGAGGUAAGCUCA___________AUUCCGGUCAGAUUUAUUGCCCAA_________________ (((((((..........)))))))....(((((((...(((((((.....))))))).)))).)))................((((.(((.....))).))))................. (-17.14 = -16.42 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:26 2006