Locus 1354

Sequence ID 3L_DroMel_CAF1
Location 3,947,656 – 3,947,747
Length 91
Max. P 0.739579
window2105

overview

Window 5

Location 3,947,656 – 3,947,747
Length 91
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 79.78
Mean single sequence MFE -15.78
Consensus MFE -10.40
Energy contribution -10.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.66
SVM decision value 0.45
SVM RNA-class probability 0.739579
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3947656 91 + 23771897
GCGAGUACAUGCAACAAAUAGUCAACUGUUGGUUGCCUUAGCCUACCUCACUGUACCACCCCCUUUCUCCAACCCAUUUCUCGCCCA-UU-UC-----
(((((.....(((((.(((((....))))).))))).......(((......)))........................)))))...-..-..----- ( -16.20)
>DroPse_CAF1 20257 91 + 1
GCGAGUACAUGCAACAAAUAGUCAACUGUUGGUUGCCUUAGCCUACCUCACUGUCGUCUC------CACCAGCACACCCCUAUGCCG-UACACUCUCU
....((((..(((((.(((((....))))).)))))........................------.....(((........))).)-)))....... ( -16.00)
>DroEre_CAF1 21013 96 + 1
GCGAGUACAUGCAACAAAUAGUCAACUGUUGGUUGCCUUAGCCUACCUCACUGUACCACCCCCUUUCUCCAGCCCAUUUCUCGCCCA-UU-UCUCUCC
(((((.....(((((.(((((....))))).)))))..............(((................))).......)))))...-..-....... ( -16.29)
>DroYak_CAF1 21708 96 + 1
GCGAGUACAUGCAACAAAUAGUCAACUGUUGGUUGCCUUAGCCUACCUCACUGUACCACCCCCUUUCUCCAGCCCAUUGCUCGCCCG-UU-UCUCUCC
(((((((...(((((.(((((....))))).)))))..............(((................))).....)))))))...-..-....... ( -19.29)
>DroAna_CAF1 19941 85 + 1
GCGAGUACAUGCAACAAAUAGUCAACUGUUGGUUGCCUUAGCCUACCUCACUGUACCACCCACC-------ACCCACCUCCCACCGAAUC-UC-----
..(.(((((.(((((.(((((....))))).)))))...((.....))...)))))).......-------...................-..----- ( -11.90)
>DroPer_CAF1 20199 91 + 1
GCGAGUACAUGCAACAAAUAGUCAACUGUUGGUUGCCUUAGCCUACCUCACUGUCGUCUC------CACCAGCACACCCCUAUCCCG-UACACUCUCU
....((((..(((((.(((((....))))).)))))..............(((..(....------)..)))..............)-)))....... ( -15.00)
>consensus
GCGAGUACAUGCAACAAAUAGUCAACUGUUGGUUGCCUUAGCCUACCUCACUGUACCACCCCCU__CUCCAGCCCACCUCUCGCCCA_UU_UCUCUC_
(((((.....(((((.(((((....))))).)))))))).))........................................................ (-10.40 = -10.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:24 2006