Locus 1352

Sequence ID 3L_DroMel_CAF1
Location 3,933,119 – 3,933,210
Length 91
Max. P 0.916063
window2103

overview

Window 3

Location 3,933,119 – 3,933,210
Length 91
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 68.85
Mean single sequence MFE -25.65
Consensus MFE -17.41
Energy contribution -17.97
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.43
Structure conservation index 0.68
SVM decision value 1.11
SVM RNA-class probability 0.916063
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3933119 91 + 23771897
GCCGGGCAAUUCUCAAAUUAGCCCGGAUGGGUCGCUCACUGGUGGCUUAUUCUCAU----UGGCGACCAUUGCCAU------CUCAUCUGCCAUGUCCUUA-------------
(((((((((((....)))).))))((((((((((((....))))))))))))....----.)))(((.((.((...------.......)).)))))....------------- ( -28.40)
>DroSec_CAF1 6005 70 + 1
GCCGGGCAAUUCUCAAAUUAGCCCGGAUGGUUCGGGCACUGGUGGCUCAUUCU-------------------------------CAUCUGCCAUGUCCUUA-------------
.((((((((((....)))).)))))).......(((((.(((..(........-------------------------------...)..))))))))...------------- ( -24.70)
>DroSim_CAF1 5969 70 + 1
GCCGGGCAAUUAUCAAAUUAGCCCGGAUGGUUCGGGCACUGGUGGCUCAUUCU-------------------------------CAUCUGCCAUGUCCUUA-------------
.((((((((((....)))).)))))).......(((((.(((..(........-------------------------------...)..))))))))...------------- ( -25.00)
>DroEre_CAF1 6210 105 + 1
GCCGGGCAAUUCUCAAAUUAGCCUGGAUGG-UCGGGCACUCAUUGCUUAUUUUCAACCAUU-UCGACCAUUGCCAGCGCCAACUCAUCUGCCACGUCCCCAGGUCCU-------
...((((.............((((((((((-(((((((.....))))..............-.)))))))..)))).))........(((.........))))))).------- ( -23.76)
>DroYak_CAF1 6318 107 + 1
GCCGGGCAAUUCUCAAAUUAGCCUGGAUGG-UCGGGCACUCAUGGCUUAUUUUCAA----U-GUGACCAUUGCCAUC-UCAUCUCAUCUGCCAUGUCCUUAGGUCCUUGGGUCC
.((((((((((....)))).))))))((((-...((((...((((.((((......----.-))))))))))))...-))))((((...(((.........)))...))))... ( -26.40)
>consensus
GCCGGGCAAUUCUCAAAUUAGCCCGGAUGG_UCGGGCACUGGUGGCUUAUUCUCA_____U___GACCAUUGCCA_______CUCAUCUGCCAUGUCCUUA_____________
.((((((((((....)))).)))))).......(((((....((((...........................................)))))))))................ (-17.41 = -17.97 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:23 2006