Locus 1351

Sequence ID 3L_DroMel_CAF1
Location 3,932,320 – 3,932,433
Length 113
Max. P 0.803085
window2102

overview

Window 2

Location 3,932,320 – 3,932,433
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.07
Mean single sequence MFE -40.90
Consensus MFE -28.84
Energy contribution -30.00
Covariance contribution 1.16
Combinations/Pair 1.21
Mean z-score -1.96
Structure conservation index 0.71
SVM decision value 0.62
SVM RNA-class probability 0.803085
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3932320 113 - 23771897
ACAACGUCCUGCGGGAGAGCUCUCGGUGCCCCACUUGCUCGCGAAGAGCCCGUCAUCACGAAGUCCGCAGGAUCUACGGCUUAAAGUUUUAUCCUCUUUAAGCUGCGUUGAAU-------
.((((((((((((((...((((((((.((.......)).).)).))))).(((....)))...)))))))))....((((((((((.........)))))))))))))))...------- ( -43.80)
>DroSec_CAF1 5163 120 - 1
ACAAUGUCCUGCGGGAGAGCUCCCGGUGCCCCACCUGCUCGCGGGCAGCUCGUCAGCACGAAGUCCGCAGGAUCUACGGCUUACACUUUUAUCCUAUUUAAGCUGCGUUGAAUUUUUUAG
.((((((((((((((.((((((((((.((.......)).).)))).))))).((.....))..)))))))))....(((((((...............)))))))))))).......... ( -42.06)
>DroSim_CAF1 5105 120 - 1
ACAAUGUCCUGCGGGAGAGCUCGCGGUGCCCCACCUGCUCGCGGGCAGCUCGUCAGCACGAAGUCCGCAGGAUCUACGGCUUACACUUUUAUCCUAUUUAAGCUGCGUUGAAUUUUUUAA
.((((((((((((((...((((((((.((.......)))))))))).(((....)))......)))))))))....(((((((...............)))))))))))).......... ( -42.76)
>DroEre_CAF1 5350 119 - 1
ACAAUGCGCUGCGGGAGUCAUCUCGAUGCCCCACCUGCUCGCGGGCAGCCCUUCAACACCAUGUCCGCAGGAUCUACGGCUUGCACUUUUAUCCUUUUU-AGCUGCGUUGCAUUUUCCAC
.(((((((((((((((....)))))..(((.......(..(((((((..............)))))))..)......)))..................)-))).)))))).......... ( -32.26)
>DroYak_CAF1 5495 119 - 1
ACAAGGUCCUGCGGGAGAGCAAUCGCUGCCCCAGCUGCUCACGGAGAGCCCGUCACCGCCAUGUCCGCAGGAUCUACGGCUUGAGCUUUUAUCCUUUUU-AGCCGCGUGGUAUUUUAUAU
...((((((((((((.(((((...((((...)))))))))((((.....))))..........)))))))))))).(((((.(((........)))...-)))))............... ( -43.60)
>consensus
ACAAUGUCCUGCGGGAGAGCUCUCGGUGCCCCACCUGCUCGCGGGCAGCCCGUCAGCACGAAGUCCGCAGGAUCUACGGCUUACACUUUUAUCCUAUUUAAGCUGCGUUGAAUUUUUUA_
.((((((((((((((.((((....((((...)))).))))((((.....))))..........)))))))))....(((((((...............)))))))))))).......... (-28.84 = -30.00 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:22 2006