Locus 1350

Sequence ID 3L_DroMel_CAF1
Location 3,929,641 – 3,929,737
Length 96
Max. P 0.716610
window2101

overview

Window 1

Location 3,929,641 – 3,929,737
Length 96
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 84.33
Mean single sequence MFE -34.92
Consensus MFE -27.25
Energy contribution -27.62
Covariance contribution 0.36
Combinations/Pair 1.06
Mean z-score -2.08
Structure conservation index 0.78
SVM decision value 0.39
SVM RNA-class probability 0.716610
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3929641 96 + 23771897
AUCAAGUGGCUGUGCAACUGCAAGAAGAUGCAGUGCACCUGAGAAUCGCCGGGGCAGUGCAGCUGCGGAUUCG------------GAUUUGGAUUCGGACGCUAAGUG
....((((((((..(.((((((......))))))((.((((........)))))).)..))))..((((((((------------....))))))))..))))..... ( -35.70)
>DroSec_CAF1 2492 96 + 1
AUCAAGUGGCUGUGCAACUGCAAGAAGAUGCAGUGCACCUGAGAAUCGCCGGGGCAGUGCAGCUGCGGAUUCG------------GAUUUGGAUUCGGACGCUAAGCG
.....(..((((..(.((((((......))))))((.((((........)))))).)..))))..)(((((((------------....)))))))...(((...))) ( -35.80)
>DroSim_CAF1 2461 96 + 1
AUCAAGUGGCUGUGCAACUGCAAGAAGAUGCAGUGCACCUGAGAAUCGCCGGGGCAGUGCAGCUGCGGAUUCG------------GAUUUGGAUUCGGACGCUAAGCG
.....(..((((..(.((((((......))))))((.((((........)))))).)..))))..)(((((((------------....)))))))...(((...))) ( -35.80)
>DroEre_CAF1 2686 96 + 1
AUCAAGUGGCUGUGCAACUGCAAGAAGAUGCAGUGCACCUGAGAAUCGCCGGGGCAGUGCAGCUGCGGAUUCG------------GAUUUGGAUUCGGACGCUGAGCG
.(((.(((((((..(.((((((......))))))((.((((........)))))).)..))))..((((((((------------....))))))))..))))))... ( -36.50)
>DroYak_CAF1 2679 108 + 1
AUCAAGUGGCUGUGCAACUGCAAGAAGAUGCAGUGCACCUGAGAAUCGCCGGGCCAGUGCAGCUGCGGAUACGGAUUUGGAUUUGGAUUUGGAUUCGGACGCUAAGUG
.......(((((..(.((((((......))))))...((((........))))...)..)))))(((....((((((..(((....)))..))))))..)))...... ( -37.20)
>DroAna_CAF1 2452 75 + 1
AUCAAGUGGCUGUGCAAUUGCAAAAAGAUGCAGUGCACCUGAGGACUACAGGAGCAGUGCAGCUGCGGAUUUG------------GC---------------------
.....(..((((..(.((((((......))))))((.((((.......)))).)).)..))))..).......------------..--------------------- ( -28.50)
>consensus
AUCAAGUGGCUGUGCAACUGCAAGAAGAUGCAGUGCACCUGAGAAUCGCCGGGGCAGUGCAGCUGCGGAUUCG____________GAUUUGGAUUCGGACGCUAAGCG
.....(..((((..(.((((((......))))))((.((((........)))))).)..))))..).......................................... (-27.25 = -27.62 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:21 2006