Locus 135

Sequence ID 3L_DroMel_CAF1
Location 424,043 – 424,136
Length 93
Max. P 0.771238
window192

overview

Window 2

Location 424,043 – 424,136
Length 93
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 85.60
Mean single sequence MFE -23.97
Consensus MFE -20.07
Energy contribution -20.48
Covariance contribution 0.42
Combinations/Pair 1.10
Mean z-score -1.96
Structure conservation index 0.84
SVM decision value 0.53
SVM RNA-class probability 0.771238
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 424043 93 - 23771897
CCAAAACCCAGACC---ACAAUGGGGAAAGUCAGCGUGGCCGUCCAGACGGAUAUAUCCGAAAUGCUUUCGGCCACUUCUUCCACCAACACAUCAC
..............---....(((((((.(....)(((((((..((..((((....))))...))....)))))))...)))).)))......... ( -25.30)
>DroSec_CAF1 5216 93 - 1
CCAAAACCCAGACC---ACAAUGGGGAAAGUCAGCGUGGCCGUCCAGACGGAUAUAUCCGAAAUGCUUUCGGCCACUUCUUCCACCAACACAUCAC
..............---....(((((((.(....)(((((((..((..((((....))))...))....)))))))...)))).)))......... ( -25.30)
>DroSim_CAF1 5404 93 - 1
CCAAAACCCAGACC---ACAAUGGGGAAAGUCAGCGUGGCCGUCCAGACGGAUAUAUCCGAAAUGCUUUCGGCCACUUCUUCCACCAACACAUCAC
..............---....(((((((.(....)(((((((..((..((((....))))...))....)))))))...)))).)))......... ( -25.30)
>DroEre_CAF1 5306 96 - 1
CCCAAACCCAGGCCACCACAAUGGGGAAAGUCAGCGUGGCCGUCCAGACGGAUAUAUCCGAAAUGCUUUCGGCCACUUCUUCCACCAACACAUCGC
.....................(((((((.(....)(((((((..((..((((....))))...))....)))))))...)))).)))......... ( -25.30)
>DroWil_CAF1 8295 79 - 1
-----------------AUCAUGAUAAAAGUUAGUGUCGCCGUACAAACGGAUAUAUCCGAAAUGCUUUCGGCCAGCUCAUCGGCCACCACAUCAC
-----------------....((((.(((((.....(((((((....)))).......)))...))))).((((........)))).....)))). ( -16.11)
>DroYak_CAF1 5509 93 - 1
CCAAAGCCCUAGCC---ACAAUGGGGAAAGUCAGCGUGGCCGUCCAGACGGACAUAUCCGAAAUGCUUUCGGCCACCUCUUCCACCAACACAUCGC
..............---....(((((((....((.((((((((((....))))......(((.....))))))))))).)))).)))......... ( -26.50)
>consensus
CCAAAACCCAGACC___ACAAUGGGGAAAGUCAGCGUGGCCGUCCAGACGGAUAUAUCCGAAAUGCUUUCGGCCACUUCUUCCACCAACACAUCAC
.....................(((((((.(....)(((((((..((..((((....))))...))....)))))))...)))).)))......... (-20.07 = -20.48 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:31 2006