| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,929,189 – 3,929,281 |
| Length | 92 |
| Max. P | 0.974730 |
| Location | 3,929,189 – 3,929,281 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 76.59 |
| Mean single sequence MFE | -32.63 |
| Consensus MFE | -19.05 |
| Energy contribution | -21.72 |
| Covariance contribution | 2.67 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.58 |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.974730 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3929189 92 - 23771897 CUUGUAGGCGGCCAGGACACCGCUGGCCGUACCCAUUCCUCCUGAACCUGGCGCUACGAGACCACCUCCUGAUCCUGGUGGUCCUCCCAUUU .((((((((((((((.......))))))))..((((((.....)))..)))..))))))(((((((..........)))))))......... ( -33.60) >DroSec_CAF1 2040 92 - 1 UUUGUAGGCGGCCAGGACACCGCUGGCCGUUCCCAUUCCUCCUGAUCCUGGCGCUACGAUAGCACCUCCUGAUCCUGGUGGUCCUCCCAUUU ..((..(((((((((.......)))))))))..))..((.((.((((..((.((((...)))).))....))))..)).))........... ( -31.30) >DroSim_CAF1 2009 92 - 1 UUUGUAGGCGGCCAGGACGCCGCUGGCCGUGCCCAUUCCUCCUGAACCUGGUGCUACGAGACCACCUCCUGAUCCUGGUGGUCCUCCCAUUU .((((((((((((((.......))))))))(((..(((.....)))...))).))))))(((((((..........)))))))......... ( -34.60) >DroEre_CAF1 2234 92 - 1 UUUGUAGGCGGCCAGCACACCACUGGCCGUGCCCAUUCCUCCCGAUCCUGGGGCUACGAGGCCACCUCCAGAUCCCGGUGGUCCUCCCAUUU ...((((((((((((.......)))))))).((((.((.....))...)))).))))(((((((((..........))))).))))...... ( -37.90) >DroYak_CAF1 2227 92 - 1 CUUGUAGGCGGCCAGCACACCGCUGGCCGUGCCCAUUCCUCCAGAUCCUGGGGCUACAAGGCCUCCUCCUGAUCCUGGUGGUCCUCCCAUUU ((((((((((((((((.....)))))))))........((((((...)))))))))))))(((.((..........)).))).......... ( -38.90) >DroPer_CAF1 1959 73 - 1 CUUGUAGGCAGCCAAUACACCGGC------ACUAGGUCCUCCACCACCUCCCAUCUCCACGCCG----CUGCUGUUGAUGGGC--------- .....(((..(((........)))------....(((.....))).)))((((((..((.((..----..))))..)))))).--------- ( -19.50) >consensus CUUGUAGGCGGCCAGGACACCGCUGGCCGUGCCCAUUCCUCCUGAACCUGGCGCUACGAGACCACCUCCUGAUCCUGGUGGUCCUCCCAUUU .((((((((((((((.......))))))))..(((.............)))..))))))(((((((..........)))))))......... (-19.05 = -21.72 + 2.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:20 2006