Locus 1348

Sequence ID 3L_DroMel_CAF1
Location 3,918,223 – 3,918,320
Length 97
Max. P 0.570612
window2099

overview

Window 9

Location 3,918,223 – 3,918,320
Length 97
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 83.60
Mean single sequence MFE -35.92
Consensus MFE -19.57
Energy contribution -20.25
Covariance contribution 0.68
Combinations/Pair 1.15
Mean z-score -2.24
Structure conservation index 0.54
SVM decision value 0.07
SVM RNA-class probability 0.570612
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3918223 97 - 23771897
AGCGAUCUUGAUGGAAACGGCGAUCCCUGGAUGCUCUUG-----------------UUCCCUGUCAUCGGGGGGUAAAGUCAUCCACUGAUAAUGCCAAUGAUCGAUAAGGAGU
..(((((.....(....)(((.(((..((((((((.(((-----------------..(((((....)))))..))))).))))))..)))...)))...)))))......... ( -36.60)
>DroSec_CAF1 14601 109 - 1
AUCGAUCUUGAUGGAAACGGUGAUCCCUGGAUGCUCUUGCAGCAUCGC-----AAGUUCACUGGCAUCUGGGGGUAAUUUCAACCACUGAUAAUGCCAAUGAUCGAUAAGGAGU
((((((((((..(....)(((.(((((..(((((((((((......))-----)))......))))))..))))).......)))...........))).)))))))....... ( -39.10)
>DroSim_CAF1 14948 109 - 1
AUCGAACUUGAUGGAAACGGUGAUCCCUGGAUGCUCUUGCUGCAUCGC-----AAGUUCACUGCCAUCUGGGGGUAAUUUCAUCCACUGAUAAUGCCAAUGAUCGAUAAGGAGU
(((((.((.(((((...((((((....(((((((.......))))).)-----)...))))))))))).)).((((...(((.....)))...)))).....)))))....... ( -31.50)
>DroEre_CAF1 14730 113 - 1
ACCGAUCUCGAUGGAAAUGGUGAUCCCGGGAUGCCCUUGCAGCAUCGCAAUCCAAGUUCCCUGCCAUCUAGGCGUAAAGUCA-CCACUGAUAAUGCCAAUGAUCGAUAGCGAGU
..(((((..(((((....((.....))((((.....((((......)))).......))))..)))))..(((((...((((-....)))).)))))...)))))......... ( -30.20)
>DroYak_CAF1 15494 109 - 1
ACCGAUCUCGUUGGAAAUGACGAUCCCUGGAUGCUCUUGCAGCAUCGC-----AAGUUCACUGCCAUCCAGGGGUAAAGUCAUCCACUGAUAGUGCCAAUGAUCGAUAGCGAGU
..(((((..(((((..(((((.(((((((((((.....((((...(..-----..)....)))))))))))))))...))))).(((.....)))))))))))))......... ( -42.20)
>consensus
ACCGAUCUUGAUGGAAACGGUGAUCCCUGGAUGCUCUUGCAGCAUCGC_____AAGUUCACUGCCAUCUGGGGGUAAAGUCAUCCACUGAUAAUGCCAAUGAUCGAUAAGGAGU
..(((((.....(....)((((((((((((((((............................).)))))))))))...((((.....))))..))))...)))))......... (-19.57 = -20.25 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:19 2006