Locus 1347

Sequence ID 3L_DroMel_CAF1
Location 3,910,380 – 3,910,471
Length 91
Max. P 0.515599
window2098

overview

Window 8

Location 3,910,380 – 3,910,471
Length 91
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 87.35
Mean single sequence MFE -19.80
Consensus MFE -15.88
Energy contribution -14.88
Covariance contribution -1.00
Combinations/Pair 1.33
Mean z-score -1.43
Structure conservation index 0.80
SVM decision value -0.04
SVM RNA-class probability 0.515599
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3910380 91 + 23771897
AAGU-GAGGGAAUUUAUCUUGACCUCUUAGCCACAGAAAUCUUCCUGUUUAACAAAGACGGGUUGAAGGAACUUGCAAACAAAUUCUGAUAU
....-((((..(.......)..)))).......(((((.((..(((((((.....)))))))..))......(((....))).))))).... ( -17.30)
>DroSec_CAF1 6959 91 + 1
AAAU-AAGGGAAUUUAUCUUGACCUCUUAGCCACAGAAAUCUUCCUGUUUAAUAAAGACGGGUUGAAGGAACUUGCAAAUUAGUUCUGGUAU
...(-(((((.............))))))(((.......((..(((((((.....)))))))..)).((((((........))))))))).. ( -20.22)
>DroSim_CAF1 7278 91 + 1
AAAU-AAGGGAAUUUAUCUUGACCCCUUAGCCACAGAAAUCUUCCUGUUUAACAAAGACGGGUUGAAGGAACUUGCAAACAAGUUCUGGUAU
...(-(((((.............))))))(((.......((..(((((((.....)))))))..)).((((((((....))))))))))).. ( -26.52)
>DroEre_CAF1 7011 92 + 1
CAGUAAAGAGAAUUUAACUUGACCUCUUAGCCACAUAAAUCUUCCUGUUUAACAAAGACGGGUUGAAGGAACUUUAAACAAAAUUUCGGCAU
.....(((((.............))))).(((.......((..(((((((.....)))))))..)).((((.(((....))).))))))).. ( -17.32)
>DroYak_CAF1 7484 91 + 1
AAAGGAAGAGAAUUUAACUUGACCUCUUGGCCGCAG-AAUCUUCCUGUUUAACAAAGACGGGUUGAAGGAACUUUAAAACAAAUUUCGGCAU
.....(((((.............))))).((((.((-(.....(((((((.....)))))))((((((...))))))......))))))).. ( -17.62)
>consensus
AAAU_AAGGGAAUUUAUCUUGACCUCUUAGCCACAGAAAUCUUCCUGUUUAACAAAGACGGGUUGAAGGAACUUGCAAACAAAUUCUGGUAU
.....(((((.............))))).(((.......((..(((((((.....)))))))..)).((((.(((....))).))))))).. (-15.88 = -14.88 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:18 2006