Locus 1346

Sequence ID 3L_DroMel_CAF1
Location 3,908,223 – 3,908,336
Length 113
Max. P 0.829335
window2097

overview

Window 7

Location 3,908,223 – 3,908,336
Length 113
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 92.67
Mean single sequence MFE -23.38
Consensus MFE -20.03
Energy contribution -20.25
Covariance contribution 0.22
Combinations/Pair 1.09
Mean z-score -1.86
Structure conservation index 0.86
SVM decision value 0.71
SVM RNA-class probability 0.829335
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3908223 113 + 23771897
UUCC-CCACAUAGC--GCCGACACUUGUCGGCUUUCCUCAAUUUAUCGCCCGUCACUCGCUGAGUUUUCGCAGACUUGAUAUUUCAAUAAUUAUGCAGCCUGACAGCCAUUUC--UCU
....-.......((--((((((....))))))...................((((...((((((((......))))(((....))).........)))).)))).))......--... ( -24.00)
>DroSec_CAF1 4881 113 + 1
UUCC-CCACAAAGC--GCCGACACUUGUCGGCUUUCCUCAAUUUAUCGCCCGUCACACGCUGAGUUUUCCCAGACUUGAUAUUUCAAUAAUUAUGCAGCCUGACAGCCAUUUC--UCU
....-.......((--((((((....))))))...................((((...((((((((......))))(((....))).........)))).)))).))......--... ( -24.00)
>DroSim_CAF1 5134 114 + 1
UUCCCCCACAUAGC--GCCGACACUUGUCGGCUUUCAUCAAUUUAUCGCCCGUCACACGCUGAGUUUUCCCAGACUUGAUAUUUCAAUAAUUAUGCAGCCUGACAGCCAUUUC--UCU
............((--((((((....))))))...................((((...((((((((......))))(((....))).........)))).)))).))......--... ( -24.00)
>DroEre_CAF1 4774 113 + 1
CUCC-CCACAGAGC--GCCGACACUUGUCGGCUUUCCUCAAUUUAUCGCCCGUCACUCGCUGAGUUUUCCCAGACUUGAUAUUUCAAUAAUUAUGCAGCCUGACAGCCAUUUC--UCU
....-....((((.--((((((....))))))...............((..((((...((((((((......))))(((....))).........)))).)))).)).....)--))) ( -25.40)
>DroYak_CAF1 5270 113 + 1
UUCC-CCACAUAGC--GUCGACACUUGUCGGCUUUCCUCAAUUUAUCGCCCGUCACUCGCUGAGUUUUCCCAGACUUGAUGUUUCAAUAAUUAUGCAGCCUGACAGCCAUUUC--UCU
....-.......((--((((((....))))))...................((((...((((((((......))))(((....))).........)))).)))).))......--... ( -21.30)
>DroAna_CAF1 10849 117 + 1
CUCC-CAAUCAAGUGUCCCGACACUUGUCGGCUUUCUUCAAUUUAUCGCCCGUCGCUGGCCGAGUUUCCCCAGACCUGAUAUUUCAAUAAUUAUGCAGCCUGACAGCCAUUUCUCUCU
....-....(((((((....)))))))..((((............(((.(((....))).))).......(((..((((((..........))).))).)))..)))).......... ( -21.60)
>consensus
UUCC_CCACAUAGC__GCCGACACUUGUCGGCUUUCCUCAAUUUAUCGCCCGUCACUCGCUGAGUUUUCCCAGACUUGAUAUUUCAAUAAUUAUGCAGCCUGACAGCCAUUUC__UCU
................((((((....))))))...............((..((((...((((.(((......)))((((....))))........)))).)))).))........... (-20.03 = -20.25 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:17 2006