| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,903,407 – 3,903,504 |
| Length | 97 |
| Max. P | 0.537266 |
| Location | 3,903,407 – 3,903,504 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.67 |
| Mean single sequence MFE | -28.65 |
| Consensus MFE | -19.56 |
| Energy contribution | -18.70 |
| Covariance contribution | -0.86 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3903407 97 - 23771897 CAACGAGCUGCAGUUUAUGCUAAAGAACCUGGGCAUAAACGUGAGUGACGAACUCAUACACGAUCUCAUACGUGAGGCGAGCCACUCAGGUGAGUGC----------------------- ......(((((.(((((((((..........)))))))))((((((.....)))))).((((........))))..)).)))(((((....))))).----------------------- ( -30.90) >DroVir_CAF1 6462 97 - 1 AAACGAGUUGCAGUUCAUGCUCAAGAAUCUGGGCAUAAAUGUGCGUGAUGAAAUUAUUCAUGAUCUUAUACGUGAGGCGAGCCAUUCAGGUAAGUGA----------------------- .........((((((.(((((((......))))))).))).)))((.(((((....))))).))....(((.(((((....))..))).))).....----------------------- ( -21.30) >DroGri_CAF1 7598 97 - 1 GAAUGAAUUGCAGUUUAUGCUCAAGAAUCUGGGCAUCGAUGUGCGUGAUGAAAUCAUACACGAUCUCAUACGUGAGGCAAGCCACUCAGGUGAGUGC----------------------- .......((((.(((.(((((((......))))))).)))...(((((((....))).))))..((((....))))))))..(((((....))))).----------------------- ( -27.60) >DroWil_CAF1 13134 120 - 1 CAAUGAACUACAGUUUAUGCUCAAGAAUCUGGGCAUAAAUGUGCGUGAUGAAAUCAUACACGAUCUCAUACGUGAGGCCAGCCAUUCAGGUAAGUCCACAGUCGCCCCCCUUUUCGGGGG ..((((..((((.((((((((((......))))))))))))))(((((((....))).))))...))))..(((.(((..(((.....)))..))))))......(((((.....))))) ( -40.30) >DroMoj_CAF1 8861 100 - 1 AAAUGAAUUGCAGUUUAUGCUCAAGAAUCUGGGCAUUAAUGUGCGUGAUGAAAUUAUACAUGAUCUCAUACGUGAGGCAAGCCAUUCAGGUAAGUGC--------CGC------------ .........(((....(((((((......)))))))...)))(((((.(((.((((....)))).))))))))..((((.(((.....)))...)))--------)..------------ ( -26.50) >DroAna_CAF1 6343 97 - 1 CAACGAGCUGCAGUUUAUGCUAAAGAACCUGGGCAUUAAUGUGCGUGAUGAAAUCAUACACGAUCUCAUACGUGAGGCCAGCCACUCAGGUAAGUGC----------------------- ......((((((.....)))......((((((((......(((..((((...))))..)))(..((((....))))..).)))...))))).)))..----------------------- ( -25.30) >consensus CAACGAACUGCAGUUUAUGCUCAAGAAUCUGGGCAUAAAUGUGCGUGAUGAAAUCAUACACGAUCUCAUACGUGAGGCAAGCCACUCAGGUAAGUGC_______________________ ............(((.(((((((......))))))).)))(((.((((.....)))).))).......(((.((((........)))).)))............................ (-19.56 = -18.70 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:16 2006