Locus 1343

Sequence ID 3L_DroMel_CAF1
Location 3,889,659 – 3,889,777
Length 118
Max. P 0.618850
window2094

overview

Window 4

Location 3,889,659 – 3,889,777
Length 118
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.48
Mean single sequence MFE -39.77
Consensus MFE -24.49
Energy contribution -23.72
Covariance contribution -0.77
Combinations/Pair 1.42
Mean z-score -1.49
Structure conservation index 0.62
SVM decision value 0.17
SVM RNA-class probability 0.618850
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3889659 118 - 23771897
UCCAAAGGAGGCAAAGCCUUACGCUCGUUAUUCUCCAACAGUUCCGACUGUUUGUUGAUGAAAAACUUGGCCUGUUUUGGUGCCCAUUUGCUCAGGGGAUUACGUUCUUGGGCA-AUAC-
.((((((.((((..(((.....))).(((.(((..((((((..........))))))..))).)))...)))).)))))).......(((((((((((......))))))))))-)...- ( -35.90)
>DroPse_CAF1 731 118 - 1
UCCACGGGCGACAAGGAGUGCCUUUCAUUGCUCUCCAGCAGCUCGGACUGUUUGUUGAUGAAGUAUUUGGCCUGCUUGGGUGCCCACUUGCUUAAGAGAUUGCGCCCGUCCGCA-CAGC-
...((((((.....((((.((........)).)))).(((((((.(((.....)))....(((((..((((((....)))...)))..)))))..))).)))))))))).....-....- ( -37.90)
>DroEre_CAF1 712 118 - 1
UCCAAGGGCGGCAAGGCCAUACGUUCGUUGUUUUCCAGCAAUUCCGACUGUUUGUUGAUGAAGAACUUGGCCUGCUUGGGCGCCCAUUUGCUCAGGGGAUUGCGUUCUUGUGCG-AUAC-
.....(((((.(.((((((...((((((((.....)))).....((((.....)))).....)))).)))))).....).)))))..((((.((((((......)))))).)))-)...- ( -41.90)
>DroYak_CAF1 711 118 - 1
UCCAAGGGCGGCAAAGCCUUACGUUCGUUGUUCUCCAGCAGUUCCGACUGUUUGUUGAUGAAGAACUUGGCCUGUUUGGGCGCCCAUUUGCUCAGGGGAUUGCGCUCUUGAGCA-AUAC-
.....(((((((...)))....((((.(..((..(.((((((....)))))).)..))..).))))...((((....))))))))..(((((((((((......))))))))))-)...- ( -44.70)
>DroAna_CAF1 705 118 - 1
UCCAUGGGCGGAAGGGCUUUUCUUUCGUUACUCUCCAGCAAUUCAGAUUGCUUGUUGAUGAAAAACUUUGCCUGUUUGGGCGCCCAUCUGCUCAAGGUAUUCCGUUC--GACCAAAUACC
....((((((((.((((.....((((((((....(.((((((....)))))).).))))))))......((((....)))))))).)))))))).((((((..(...--..)..)))))) ( -40.30)
>DroPer_CAF1 731 118 - 1
UCCACGGGCGACAAGGAGUGCCUUUCAUUGCUCUCCAGCAGCUCGGACUGUUUGUUAAUGAAGUAUUUGGCCUGCUUGGGUGCCCACUUGCUUAAGAGAUUGCGCCCGUCCGCA-CAGC-
...((((((.....((((.((........)).)))).(((((((.(((.....)))....(((((..((((((....)))...)))..)))))..))).)))))))))).....-....- ( -37.90)
>consensus
UCCAAGGGCGGCAAGGCCUUACGUUCGUUGCUCUCCAGCAGUUCCGACUGUUUGUUGAUGAAGAACUUGGCCUGCUUGGGCGCCCAUUUGCUCAAGGGAUUGCGCUCUUGAGCA_AUAC_
..((((((((...((((......(((((((....(.(((((......))))).).))))))).......)))).((((((((......))))))))......)))))))).......... (-24.49 = -23.72 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:13 2006