| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,889,108 – 3,889,212 |
| Length | 104 |
| Max. P | 0.839053 |
| Location | 3,889,108 – 3,889,212 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 78.74 |
| Mean single sequence MFE | -24.74 |
| Consensus MFE | -16.10 |
| Energy contribution | -17.43 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.839053 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3889108 104 + 23771897 -UUCUAACAUUUAU----CAAUUUUUAAAGAACAAAAAAAACUGUUUGGAUACUGGGAUAUCCAUGCGCACCCAGCGACGGCGCAUGUUCUAUAUGCUGGUAUUCAAGC -.............----.........................((((((((((..(.((((.(((((((...........)))))))....)))).)..)))))))))) ( -27.50) >DroGri_CAF1 148 102 + 1 -UAAUACAGUAGA------CAAAUUUGUAGGACAAAAAGAGCUCGAUGGAGACGGGAAUAACAAUGCGUUCGCAGCGACGUCGCAUGUUUUUUAUGCUGAUUUUCAAUC -.....(((((..------.....(((.....)))(((((((.(((((..(..(.((((........)))).)..)..)))))...))))))).))))).......... ( -20.30) >DroSec_CAF1 157 104 + 1 -UUCUAACAUAUAU----CAAUUUUUAAAGAACAAAAAAAAUUGUUUAGAUACUGGUAUAUCCAUGCGCACCCAGCGACGGCGCAUGUUCUAUAUGCUAGUUUUCAAGC -.............----...........((((((......)))))).((.((((((((((.(((((((...........)))))))....))))))))))..)).... ( -24.10) >DroSim_CAF1 157 104 + 1 -UUCUAACAUAUAU----CAAUUUUUAAAGAACAAAAAAAACUGUUUGGAUACUGGGAUAUCCAUGCGCACCCAGCGACGGCGCAUGUUCUAUAUGCUGGUAUUCAAGC -.............----.........................((((((((((..(.((((.(((((((...........)))))))....)))).)..)))))))))) ( -27.50) >DroYak_CAF1 156 108 + 1 -UUCUUACACAUUUUUUAAACUUUUUUAAGAACAAAAAGUCCUGUCUGGAUACGGGGAUAUCCAUGCGCACCCAGCGACGGCGCAUGUUCUAUAUGCUGGUAUUCAAGC -..................(((((((.......)))))))...(..(((((((.((.((((.(((((((...........)))))))....)))).)).)))))))..) ( -25.60) >DroAna_CAF1 159 105 + 1 AUUUUAUGAAAUAU----UAAUGUUUGUAGAACAAAAAGACAUGUUUGGAUACUGGGAUAUCCAUGGCCACCAAGCGGCGACGCAUGUUCUAUAUGCUCAUCUUCAAAC ......((((....----....((.(((((((((.........(((((((((......)))))).)))......(((....))).))))))))).)).....))))... ( -23.42) >consensus _UUCUAACAUAUAU____CAAUUUUUAAAGAACAAAAAAAACUGUUUGGAUACUGGGAUAUCCAUGCGCACCCAGCGACGGCGCAUGUUCUAUAUGCUGGUAUUCAAGC ...........................................((((((((((.((.((((.(((((((...........)))))))....)))).)).)))))))))) (-16.10 = -17.43 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:11 2006