| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,887,983 – 3,888,090 |
| Length | 107 |
| Max. P | 0.500000 |
| Location | 3,887,983 – 3,888,090 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 70.97 |
| Mean single sequence MFE | -16.97 |
| Consensus MFE | -12.89 |
| Energy contribution | -12.50 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.48 |
| Structure conservation index | 0.76 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3887983 107 + 23771897 CCAUUAAUCAUAUUUGCAGACCCACAAA-CUAAGCCGCACACUUUUCACUUUCAGCUCUGCGAACUAGGAAACUUUUCGGUGCACAUUGCCCUGCGCAACCUGCGUCC ...............((((.........-.......((((............((....))((((..((....)).))))))))...((((.....)))).)))).... ( -19.40) >DroVir_CAF1 999 89 + 1 --------CUUCUUUCU--------AA-AUUCU--UCUAAAUUGUUACUUUAUAGCUCUGCGAAUUGGGCAACUUUUCGAUACACAUUGCUCUGCGCAAUCUGCGUCC --------.........--------..-.....--...................((((........))))........((..((.(((((.....))))).))..)). ( -13.00) >DroSec_CAF1 924 107 + 1 CCAUUAAUCAUAUAUACAGACCCCCAAA-CUAAGCCGCACACUUUUCACUUUCAGCUCUGCGAACUAGGAAACUUUUCGGUGCACAUUGCCCUACGCAACCUGCGUCC ..................(((.......-....((((((...................)))(((..((....)).))))))(((..((((.....))))..)))))). ( -17.41) >DroEre_CAF1 1051 104 + 1 GUGUUACUCAUAUAUACAGACCACCAAA-AUAAGCGCA---UUUUUCACUUUCAGCUCUGCGAACUGGGAAACUUUUCGGUGCACAUUGCCCUGCGCAACCUGCGUCC ((((.........))))...........-....(((((---...................((((..((....)).))))(((((........)))))....))))).. ( -18.60) >DroYak_CAF1 3393 107 + 1 CCAUUAAUCAUAUAUACAGACCCACAAA-CUAAGCUCUAAUUUGUUCACUUUCAGCUAUGCGAACUGGGAAACUUUUCGGUGCACAUUGCACUGCGCAACCUGCGCCC ....................((((....-...((((.................))))........)))).........((((((..((((.....))))..)))))). ( -19.99) >DroMoj_CAF1 950 89 + 1 --------CUUAUGUAA--------AC-AUUCU--AAAGGAUUUUUGAUUUUUAGCUCUGCGAAUUGGGCAACUUUUCGAUACACAUUGCUUUACGUAAUUUGCGUCC --------.((((((((--------((-(..((--(((((........))))))).....((((..((....)).))))........)).)))))))))......... ( -13.40) >consensus CCAUUAAUCAUAUAUACAGACCC_CAAA_CUAAGCCCAAAAUUUUUCACUUUCAGCUCUGCGAACUGGGAAACUUUUCGGUGCACAUUGCCCUGCGCAACCUGCGUCC .............................................................(((..((....)).)))((((((..((((.....))))..)))))). (-12.89 = -12.50 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:10 2006