| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,879,952 – 3,880,069 |
| Length | 117 |
| Max. P | 0.632225 |
| Location | 3,879,952 – 3,880,069 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.67 |
| Mean single sequence MFE | -40.25 |
| Consensus MFE | -22.88 |
| Energy contribution | -24.25 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.632225 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3879952 117 - 23771897 GCUAAUGCCCAGGCAUACUUGUACGGGGUCCGCAAGUACUCCAUUGGAUUGGCGGAGCGAUUGGAUGCGGAUUACGAAGCUCCUCCGUUGGAUAGGAAAAAGAGCUCGGACAGCACG--- (((....(((..(((....)))..)))(((((..(((.(((((((.(((.((.(((((..(((...........))).))))).))))).))).)))....).)))))))))))...--- ( -36.40) >DroPse_CAF1 1412 117 - 1 GGCAAUGCCCAGGCCUAUCUAUACGGAGUGCGGAAGUACUCCAUUGGGCUGGCCGAGCGCUUGGACGCUGACUACCAGCCGCCUCCAAGUGACAGGAAAAAGAGCUCGGAUAGCACU--- .((.((.((..((((..((((...(((((((....)))))))..))))..))))((((.(((((..((((.....))))..))(((........)))..))).)))))))).))...--- ( -48.10) >DroWil_CAF1 1414 117 - 1 GCAAAUGCCCAAGCCUAUUUAUAUGGAGUGCGCAAGUAUUCCAUAGGCUUGGCCGAGAGAUUGGACAGUGACUAUCAACCGCCGCCAAUUGAAAGGAAAAAGAGUACGGCUAGUACC--- ((....))(((((((((......((((((((....)))))))))))))))))((....((((((.(.(((.........))).)))))))....)).......((((.....)))).--- ( -41.10) >DroMoj_CAF1 1336 120 - 1 GGAAAUGCACAGGCCUAUUUACAUGGCGUACGGAAAUAUUCCAUUGGAUUGGCUGAGCGUUUGGACAGUGAUUAUAUACCGCCACCCAAUGAUGGAAAACGAAGCUCAGUCAGCACAAUU ((((...(..(.(((.........))).)...).....))))((((..((((((((((...(((.(.(((......))).)))).(((....)))........))))))))))..)))). ( -30.90) >DroAna_CAF1 1428 117 - 1 GCCAAUGCCCAGGCCUACUUGUACGGGGUACGGAAGUAUUCCAUUGGUUUGGCAGAGCGCUUGGAUGCGGAUUACGAAGCGCCACCAGUGGAUAGAAAGAAGAGCUCGGAUAGCACA--- (((((.(((((((....))))...(((((((....)))))))...)))))))).((((((((.(..........).)))).(((....)))............))))..........--- ( -36.90) >DroPer_CAF1 1412 117 - 1 GGCAAUGCCCAGGCCUAUCUAUACGGAGUGCGGAAGUACUCCAUUGGGCUGGCCGAGCGCUUGGACGCUGACUACCAGCCGCCUCCAAGUGACAGGAAAAAGAGCUCGGAUAGCACU--- .((.((.((..((((..((((...(((((((....)))))))..))))..))))((((.(((((..((((.....))))..))(((........)))..))).)))))))).))...--- ( -48.10) >consensus GCCAAUGCCCAGGCCUAUUUAUACGGAGUGCGGAAGUACUCCAUUGGAUUGGCCGAGCGCUUGGACGCUGACUACCAACCGCCUCCAAUUGAUAGGAAAAAGAGCUCGGAUAGCACA___ .....(((((((.((.........(((((((....)))))))...)).))))((((((.(((((.((((........)))))).((........))...))).))))))...)))..... (-22.88 = -24.25 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:08 2006