| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,874,410 – 3,874,518 |
| Length | 108 |
| Max. P | 0.996148 |
| Location | 3,874,410 – 3,874,518 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 77.62 |
| Mean single sequence MFE | -32.32 |
| Consensus MFE | -25.98 |
| Energy contribution | -27.47 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.80 |
| SVM decision value | 2.66 |
| SVM RNA-class probability | 0.996148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3874410 108 + 23771897 CCGUGGCAAUAACGCCACACAUUUGUAAUGUUGCUUCUGUUUUUGGCUGAAAGAGGAGCC-CAGGAAGCAGCAGAGACAGUAGAGGAACUGCACUAAAUGCUCACACUG ..(((((......))))).(((((((..((((((((((......((((........))))-..))))))))))...)).((((.....))))...)))))......... ( -34.40) >DroPse_CAF1 85779 86 + 1 CCGUGGCAAUAACGCCACACAUUUGUAAUGUUGCUUCUGUUUUUUGCUGAAAGAGAAGCCACCAGAGGCAG--AUGACUCCAGAGGG---------------------G (((((((......))))).(((((((..((..((((((.((((.....)))).))))))...))...))))--)))........)).---------------------. ( -30.20) >DroYak_CAF1 75600 108 + 1 CCGUGGCAAUAACGCCACACAUUUGUAAUGUUGCUUCUGUUUUUGGCUGAAAGAGGAGCC-CAGGAAGCAGCAAAGACAGCAGAGGAAAUGCACCGAAUGCUCACACUG ..(((((......))))).((((((...((((((((((......((((........))))-..))))))))))......(((.......)))..))))))......... ( -34.50) >DroPer_CAF1 86205 86 + 1 CCGUGGCAAUAACGCCACACAUUUGUAAUGUUGCUUCUGUUUUUUGCUGAAAGAGAAGCCACCAGAGGCAG--AUGACUCCAGAGGG---------------------G (((((((......))))).(((((((..((..((((((.((((.....)))).))))))...))...))))--)))........)).---------------------. ( -30.20) >consensus CCGUGGCAAUAACGCCACACAUUUGUAAUGUUGCUUCUGUUUUUGGCUGAAAGAGAAGCC_CAAGAAGCAG__AAGACACCAGAGGA_____________________G (((((((......)))))......((..(((((((((((.....((((........))))..)))))))))))...))......))....................... (-25.98 = -27.47 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:04 2006