Locus 1335

Sequence ID 3L_DroMel_CAF1
Location 3,867,651 – 3,867,742
Length 91
Max. P 0.646064
window2083

overview

Window 3

Location 3,867,651 – 3,867,742
Length 91
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 75.96
Mean single sequence MFE -15.85
Consensus MFE -8.65
Energy contribution -8.65
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.55
SVM decision value 0.23
SVM RNA-class probability 0.646064
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3867651 91 + 23771897
CUCUA---CCCUCUCUAUAAAGAGGGUUCCAUAACCCAAGCCAUCCA-AU-----CCCAUUCCCAUUCCCAUUCCCACUUCGGGUCGAUUUAUAGCUGGA
....(---((((((......)))))))........(((.((.....(-((-----(.....(((.................)))..))))....))))). ( -17.33)
>DroSec_CAF1 66759 84 + 1
CUCUG---CCCUCUCUAUAAAGAGGGUUCCAUAAUCCAGGCCGUCCA-AU-----CCCAUUCC------CAUUCCCACUUCGGGUCGAUUUAUAGUUGG-
....(---((((((......))))))).................(((-((-----........------....(((.....)))..........)))))- ( -16.25)
>DroEre_CAF1 69062 79 + 1
CACCG---CCCUCUCUAUAAAGAGGGUUCCCCAAC-CAAGCCAUU----------UCCAUUCCCAUUCCCA------CUUCGGGUCGAUUUAUAGUUGA-
....(---((((((......)))))))........-.........----------............(((.------....)))(((((.....)))))- ( -14.80)
>DroYak_CAF1 69208 99 + 1
CGCCGCUGCCCUCUCUAUAAAGAGGGUUCCAUAACCCAAGCCAUCCACAUCCACAUCCAUACCCAUUCCCAUUUCACCUUCGGCUCGAUUUAUAGUUAA-
....(..(((((((......)))))))..)((((..(.((((.......................................)))).)..))))......- ( -15.03)
>consensus
CUCCG___CCCUCUCUAUAAAGAGGGUUCCAUAACCCAAGCCAUCCA_AU_____CCCAUUCCCAUUCCCAUUCCCACUUCGGGUCGAUUUAUAGUUGA_
........((((((......)))))).......................................................................... ( -8.65 =  -8.65 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:03 2006