Locus 1333

Sequence ID 3L_DroMel_CAF1
Location 3,865,988 – 3,866,083
Length 95
Max. P 0.534151
window2078

overview

Window 8

Location 3,865,988 – 3,866,083
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 97.88
Mean single sequence MFE -12.59
Consensus MFE -12.36
Energy contribution -12.69
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.98
SVM decision value 0.00
SVM RNA-class probability 0.534151
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3865988 95 - 23771897
CAUACCCUGUCGAACCGAACCACUUCGCACAACACCACACACUCAACCGCACGGACAUGCUCUCUAUAAUUUAUUUUGACAUGUUUGCCAACACA
.......(((((((.........)))).)))....................((((((((.((...............))))))))))........ ( -10.26)
>DroSec_CAF1 65087 93 - 1
CAUACCCUGUCGAAGCGAACCACUUCGCACAACACCAC--ACUCAACCGCACGGACAUGCUCUCUAUAAUUUAUUUUGACAUGUUUGCCAACACA
.......((((((((.......))))).))).......--...........((((((((.((...............))))))))))........ ( -13.76)
>DroSim_CAF1 66406 93 - 1
CAUACCCUGUCGAAGCGAACCACUUCGCACAACACCAC--ACUCAACCGCACGGACAUGCUCUCUAUAAUUUAUUUUGACAUGUUUGCCAACACA
.......((((((((.......))))).))).......--...........((((((((.((...............))))))))))........ ( -13.76)
>consensus
CAUACCCUGUCGAAGCGAACCACUUCGCACAACACCAC__ACUCAACCGCACGGACAUGCUCUCUAUAAUUUAUUUUGACAUGUUUGCCAACACA
.......((((((((.......))))).)))....................((((((((.((...............))))))))))........ (-12.36 = -12.69 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:58 2006