| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,859,281 – 3,859,379 |
| Length | 98 |
| Max. P | 0.994728 |
| Location | 3,859,281 – 3,859,379 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.92 |
| Mean single sequence MFE | -30.46 |
| Consensus MFE | -18.69 |
| Energy contribution | -18.45 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.92 |
| Structure conservation index | 0.61 |
| SVM decision value | 2.51 |
| SVM RNA-class probability | 0.994728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3859281 98 - 23771897 ACUCUGAAUGUGGCAACUUGUCAACAGGUUGCCCCGCA----ACCCGAUACCCAAA----A---CCUUAAGUCCCGA-----------AAUCAAAUCGGUAGGGUUUACCAUUUAUCUGG ........((((((((((((....)))))))))..)))----.((.((((....((----(---(((((....((((-----------.......))))))))))))......)))).)) ( -27.90) >DroSec_CAF1 58501 90 - 1 ACUUUGAAUGUGGCAACUUGUCAACAGGUUGCCCCGAA----ACCCGAUA--------------CCUUAAGCCCCGA-----------UAUCAAAUCGGUAG-GUUUACCAUUUAUCUGG ........((.(((((((((....))))))))).))..----.((.((((--------------...((((((((((-----------(.....)))))..)-))))).....)))).)) ( -27.90) >DroSim_CAF1 59116 90 - 1 ACUUUGAAUGUGGCAACUUGUCAACAGGUUGCCCCGAA----ACCCGAUA--------------CCUUAAGCCCCGA-----------UAUCAAAUCGGUAG-GUUUACCAUUUAUCUGG ........((.(((((((((....))))))))).))..----.((.((((--------------...((((((((((-----------(.....)))))..)-))))).....)))).)) ( -27.90) >DroEre_CAF1 60915 105 - 1 GUUUUGAAUGUGGCAACUUGUCAACAGGUUGCCCCGAA----ACCCGAUACCCGAU----A---CCUUAAGUCCCGAAAAG---GGAAAAUCAAAUCGGUAG-GUUUACCAUUUAUCUGG ((((((...(.(((((((((....))))))))))))))----))((((((.(((((----.---.......((((.....)---))).......)))))..(-(....))...)))).)) ( -32.86) >DroYak_CAF1 60812 108 - 1 UUUUUGAAUGUGGCAACUUGUCAACAGGUUGCCCCGAA----ACCCGAUAUCUGAU----A---CCUUAAGCCCCGAAAACGGAGGAAAAUCAAAUCGGUAG-GUUUACCAUUUAUCUGU ....((((((.(((((((((....)))))))))...((----(((......(((((----.---.......(((((....))).))........)))))..)-))))..))))))..... ( -29.49) >DroPer_CAF1 67817 112 - 1 ---CUAGAUGUGGCAACUUGUCAACAGGUUGCCACAGACGUUACCUGAUACUGGACUUGGACUUUCUCAAGUCA----AAUGAAAGAAAUGGAAAUCGGUAG-GGCUACAAUUUAUCUGA ---.((((((((((((((((....)))))))))))....((..(((..((((((((((((......))))))).----..........((....))))))))-))..)).....))))). ( -36.70) >consensus ACUUUGAAUGUGGCAACUUGUCAACAGGUUGCCCCGAA____ACCCGAUACC_GA_____A___CCUUAAGCCCCGA___________AAUCAAAUCGGUAG_GUUUACCAUUUAUCUGG ....((((((.(((((((((....)))))))))...........(((((.............................................)))))..........))))))..... (-18.69 = -18.45 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:54 2006