Locus 1328

Sequence ID 3L_DroMel_CAF1
Location 3,854,094 – 3,854,197
Length 103
Max. P 0.918757
window2071

overview

Window 1

Location 3,854,094 – 3,854,197
Length 103
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 74.91
Mean single sequence MFE -27.08
Consensus MFE -6.46
Energy contribution -7.30
Covariance contribution 0.84
Combinations/Pair 1.07
Mean z-score -1.99
Structure conservation index 0.24
SVM decision value 1.12
SVM RNA-class probability 0.918757
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3854094 103 + 23771897
AAUACAUAUGUUCACUUUGUGUUCGCGCCUUGAUCCUU-UUUGCUAUCGAGCAAAGAG-----CAUCGGGUAUAUAGGG----CAUUUAGUU-----UGAAACAA-AAAAAUCGGAAAU
........((((((((..((((((..((((.(((.(((-((((((....)))))))))-----.))))))).....)))----)))..))).-----.).)))).-............. ( -25.30)
>DroPse_CAF1 60858 112 + 1
AAUACAUAUGUUCACUUUGUGUUCGCGCCUUGAUCCUUUUUUGAUAUCCAGCAGUAAUAUAAUGUGAGGGUAUAUUGGCUGAGGAUGAGGUG-----GAAG-GAAGU-GGGUUAUAUUU
.....(((((..((((((...(((.((((((.((((((..(..((((((.(((.........)))...)).))))..)..))))))))))))-----))).-)))))-)..).)))).. ( -33.80)
>DroSec_CAF1 53567 104 + 1
AAUACAUAUGUUCACUUUGUGUUCGCGCCUUGAUCCUU-UUUGCUAUCGAACAGAGGG-----CAUCGGGUAUAUUGGA----CAUAAUGUU-----UAAACCUACAAAAAUAGGAAAU
...(((((((((((...((((..((.(((((....((.-((((....)))).))))))-----)..))..)))).))))----))).)))).-----....((((......)))).... ( -23.50)
>DroSim_CAF1 53990 104 + 1
AAUACAUAUGUUCACUUUGUGUUCGCUCCUUGAUCCUU-UUUGCUAUCAAGCAGAGGG-----UAUCGGGUAUAUUGGA----CAUCAUGUU-----UGAAAAAACAAAAAUAAGAAAU
..........(((.....(((((((...((((((.(((-((((((....)))))))))-----.)))))).....))))----)))..((((-----(....))))).......))).. ( -24.80)
>DroYak_CAF1 55461 109 + 1
AAUACAUAUGUUCACUUUGUGUUCGCGCCUUGAUCCUU-UUUGCUAUCGAGCAGAGGG-----CUGCGGGUAUAAAGGG----CAUUUGAUUGAUUGAAAAGGAAUAAAAAUUAUAAAC
....((.((((...(((((((..(((((((........-((((((....)))))))))-----).)))..))))))).)----))).)).............................. ( -28.00)
>consensus
AAUACAUAUGUUCACUUUGUGUUCGCGCCUUGAUCCUU_UUUGCUAUCGAGCAGAGGG_____CAUCGGGUAUAUUGGA____CAUUAGGUU_____UAAAACAACAAAAAUAAGAAAU
.....(((((..(.....(((....)))...........((((((....))))))............)..)))))............................................ ( -6.46 =  -7.30 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:51 2006