Locus 1326

Sequence ID 3L_DroMel_CAF1
Location 3,850,973 – 3,851,070
Length 97
Max. P 0.591385
window2069

overview

Window 9

Location 3,850,973 – 3,851,070
Length 97
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 75.00
Mean single sequence MFE -21.74
Consensus MFE -6.18
Energy contribution -4.90
Covariance contribution -1.28
Combinations/Pair 1.32
Mean z-score -1.71
Structure conservation index 0.28
SVM decision value 0.12
SVM RNA-class probability 0.591385
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3850973 97 + 23771897
AUGAUGAUGAUGAUGAUGGGCGCAAUGAUGAUCAUCAUUAACACCUUUCUGCC-----------CGCGAUC-----UCACUCACAUUCUGUGGCGAGCACAAUACGUCUCAAC
.(((.((((.(((((((((...((....)).))))))))).........(((.-----------((((...-----.)...(((.....)))))).))).....))))))).. ( -23.00)
>DroPse_CAF1 57203 102 + 1
AUGAU---------GAUGACUAUAAUGAUGAUCAUCAUUAACACCUUUCUGCCGCACAGAGAGCCGUGCCCCACCACCACCACCGCUCU--GUGGAGCACAAUACGUCUCAAC
.(((.---------((((....(((((((....)))))))....(((((((.....)))))))..((((.((((...............--)))).))))....))))))).. ( -27.96)
>DroEre_CAF1 51173 86 + 1
AUGAU---------GAUGAGCGCAAUGAUGAUCAUCAUUAACACCUUUCUGCC-----------CGCGAUC-----UCACUCACAUUCU--GGCGAGCACAAUACUUCUCAAC
.((((---------(((((...((....)).))))))))).........(((.-----------(((....-----.............--.))).))).............. ( -15.27)
>DroYak_CAF1 52267 86 + 1
AUGAU---------GAUGAGCGCAAUGAUGAUCAUCAUUAACACCUUUCUGCC-----------CGCGAUC-----UCACUCACAUGCG--ACCGAGCACAAUACUUCUCAAC
.((((---------(((((...((....)).))))))))).........(((.-----------((.(.((-----.((......)).)--)))).))).............. ( -14.50)
>DroPer_CAF1 55434 102 + 1
AUGAU---------GAUGACUAUAAUGAUGAUCAUCAUUAACACCUUUCUGCCGCACAGAGAGCCGUGCCCCACCACCACCACCGCUCU--GUGGAGCACAAUACGUCUCAAC
.(((.---------((((....(((((((....)))))))....(((((((.....)))))))..((((.((((...............--)))).))))....))))))).. ( -27.96)
>consensus
AUGAU_________GAUGAGCGCAAUGAUGAUCAUCAUUAACACCUUUCUGCC___________CGCGAUC_____UCACUCACAUUCU__GGCGAGCACAAUACGUCUCAAC
..............((.((((((((((((....))))))..((......))..............))).................(((......)))........)))))... ( -6.18 =  -4.90 +  -1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:49 2006