Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,849,522 – 3,849,641 |
Length | 119 |
Max. P | 0.519497 |
Location | 3,849,522 – 3,849,641 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.48 |
Mean single sequence MFE | -22.84 |
Consensus MFE | -10.55 |
Energy contribution | -11.71 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.12 |
Mean z-score | -2.13 |
Structure conservation index | 0.46 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519497 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3849522 119 + 23771897 AAUUACUACGCCCGCUAAACAAUGUCCGUUAAGUAAAUAGGCAAAUAUCCACCUU-ACUACUACUUAACAGUUUGCCAGCUAACUAAAAGUCGGCAGACAAUGUCGUAAACUAAAUGACU ..((((.(((.................((((((((...(((..........))).-.....)))))))).(((((((.(((.......))).)))))))..))).))))........... ( -24.40) >DroSec_CAF1 49008 119 + 1 AAUUACAACGCCCGCUAAACAAUGUCCGUUAAGUAAAUAGGAAAAUAUCCACCUU-ACUACUACUUAACAGUCAGCCAGCUAACUAAAAGUCGGCAGACAUUGUCGUAAACUAAAUGACU ..((((...(....)...((((((((.((((((((...(((..........))).-.....)))))))).....(((.(((.......))).))).)))))))).))))........... ( -25.00) >DroSim_CAF1 49473 119 + 1 AAUUACUACGCCCGCUAAACAAUGUCCGUUAAGUAAAUAGGCAAAUAUCCACCUU-ACUACUACUUAACAGUCAGCCAGCUAACUAAAAGUCGGCAGACAUUGUCGUAAACUAAAUGACU ......((((........((((((((.((((((((...(((..........))).-.....)))))))).....(((.(((.......))).))).))))))))))))............ ( -25.50) >DroEre_CAF1 49794 116 + 1 AAUUACUACGCCCGCGAAACAAUGUCCGUUAAA----UAGAAAAAUACCUCGCUUAGGUUCUACUUCAAAGUUUGUUAGCAAACUUAGGGUCGACAUAGAUUGUCGUAAACUAAAUUCGC .............(((((......(((......----..(((....((((.....)))).....))).(((((((....))))))).))).(((((.....))))).........))))) ( -22.90) >DroYak_CAF1 50821 112 + 1 AAUUACUACGCCCGCCAAACAAUAUCCGUUAAG----UAGGCACAUACCUAUCCUAACUACUACUUCAAAGUUUGUCAGCAAACUA----CCAGCAGCAAUUGUCGUAAACUAAAUUCGU ..((((.(((...((............((((.(----((((......)))))..))))...........((((((....)))))).----......))...))).))))........... ( -16.40) >consensus AAUUACUACGCCCGCUAAACAAUGUCCGUUAAGUAAAUAGGCAAAUAUCCACCUU_ACUACUACUUAACAGUUUGCCAGCUAACUAAAAGUCGGCAGACAUUGUCGUAAACUAAAUGACU ......((((........((((((((.(((.......(((....................)))......((((((....)))))).......))).))))))))))))............ (-10.55 = -11.71 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:48 2006