Locus 1324

Sequence ID 3L_DroMel_CAF1
Location 3,848,740 – 3,848,840
Length 100
Max. P 0.997621
window2067

overview

Window 7

Location 3,848,740 – 3,848,840
Length 100
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 92.96
Mean single sequence MFE -38.28
Consensus MFE -36.14
Energy contribution -36.54
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.94
SVM decision value 2.90
SVM RNA-class probability 0.997621
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3848740 100 - 23771897
------AGCAACCACCGACGGCUUGUUGGCCCGGCGACCACAGCUGGGUGUCCUGUGCGCGCACAGUUAACUUAAGUUAAGCAAACUCGGUGGCCAGCAAAGGCAA
------.((..(((((((..(((((...(((((((.......)))))))...(((((....)))))...........)))))....)))))))...))........ ( -38.30)
>DroSec_CAF1 48222 101 - 1
AACAGCGGCAACCACCGACGGCUUGUUGGCCCGGCGACCACAGCUGGGUGUCCUGUGCGCGCACAGUUAACUUAAGUUAAGCAAACUCGGUGGCCAGCAAA-----
....(((((...((((((..(((((...(((((((.......)))))))...(((((....)))))...........)))))....))))))))).))...----- ( -39.40)
>DroSim_CAF1 48702 98 - 1
A---GCAGCAACCACCGACGGCUUGUUGGCCCGGCGACCACAGCUGGGUGUCCUGUGCGCGCACAGUUAACUUAAGUUAAGCAAACUCGGUGGCCAGCAAA-----
.---...((..(((((((..(((((...(((((((.......)))))))...(((((....)))))...........)))))....)))))))...))...----- ( -38.30)
>DroEre_CAF1 49023 101 - 1
AGCAGCAGCAACCACCGACGGCUUGUUGGCCCGGCGACCACAGCUGGGUGUCCUGUGCGCGCCCAGUUAACUUAAGUUAAGCAAACUCGGUGGCCAGCAAA-----
.((..((((((((......)).))))))....(((.(((..((((((((((.......))))))))))......((((.....)))).))).))).))...----- ( -37.70)
>DroYak_CAF1 50019 103 - 1
---AGCAGCAACCACCGACGGCUUGUUGGCCCGGCGACCACAGCUGGGUGUCCUGUGCGCGCCCAGUUAACUUAAGUUAAGCAAACUCGGUGGCCAGCAAAGGCAA
---.((.((..(((((((.((((....))))..((.......(((((((((.......)))))))))((((....)))).))....)))))))...))....)).. ( -37.70)
>consensus
A__AGCAGCAACCACCGACGGCUUGUUGGCCCGGCGACCACAGCUGGGUGUCCUGUGCGCGCACAGUUAACUUAAGUUAAGCAAACUCGGUGGCCAGCAAA_____
.......((..(((((((..(((((...(((((((.......)))))))...(((((....)))))...........)))))....)))))))...))........ (-36.14 = -36.54 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:47 2006