| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,836,288 – 3,836,403 |
| Length | 115 |
| Max. P | 0.981586 |
| Location | 3,836,288 – 3,836,403 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 93.30 |
| Mean single sequence MFE | -32.02 |
| Consensus MFE | -27.65 |
| Energy contribution | -27.70 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.981586 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3836288 115 + 23771897 GCUGUGUGUGCGUGUGAUGUGCGAAUAUGUUGUG----AAAAUUGAAUGGCAUAUGCACAUUUUGUCGCCAGUGAUAAAAUUUAAUAACGCUGAUAAAUUUAGCAAAAACACGCUGGAC .........(((((((((((((..((((((..(.----........)..)))))))))))))((((((....))))))...........(((((.....)))))....))))))..... ( -32.10) >DroPse_CAF1 39493 115 + 1 CCUGGGUGUGCGUGCGAUGUGCGAAUAUGUUGUG----AAAAUUGAAUGGCAUAUGCACAUUUUGUCGCCAGUGAUAAAAUUUAAUAACGCUGAUAAAUUUAGCAAAAACACGCUGGAC ((.(.((((...((((((((((..((((((..(.----........)..))))))))))))).......(((((.((........)).))))).........)))...)))).).)).. ( -32.60) >DroWil_CAF1 55047 119 + 1 UGUGUGUGUUCGUGUGAUGUGUGAAUAUGUUGUGCAAAAAAAUUGAAUGGCAUAUGCACAUUUUGUCGCCAGUGAUAAAAUUUAAUAACGCUGAUAAAUUUAGCAAAAACAUGCUGGAC ...(((((((.(.((((((((((.((((((..(.(((.....))).)..)))))).)))))...))))))...................(((((.....)))))...)))))))..... ( -29.50) >DroYak_CAF1 36943 115 + 1 GCUGUGUGUGCGUGUGAUGUGCGAAUAUGUUGUG----AAAAUUGAAUGGCAUAUGCACAUUUUGUCGCCAGUGAUAAAAUUUAAUAACACUGAUAAAUUUAGCAAAAACACGCUGCAC ((.(((((((((...(((((((..((((((..(.----........)..)))))))))))))....)))(((((.((........)).)))))...............)))))).)).. ( -34.90) >DroAna_CAF1 35168 110 + 1 -----CGAUGCGUGCGAUGUGCGAAUAUGUUGUG----AAAAUUGAAUGGCAUAUGCACAUUUUGUCGCCAGUGAUAAAAUUUAAUAACGCUGAUAAAUUUAGCAAAAACACGCUGGUC -----....(((((.(((((((..((((((..(.----........)..)))))))))))))((((((....))))))...........(((((.....))))).....)))))..... ( -30.40) >DroPer_CAF1 39898 115 + 1 CCUGGGUGUGCGUGCGAUGUGCGAAUAUGUUGUG----AAAAUUGAAUGGCAUAUGCACAUUUUGUCGCCAGUGAUAAAAUUUAAUAACGCUGAUAAAUUUAGCAAAAACACGCUGGAC ((.(.((((...((((((((((..((((((..(.----........)..))))))))))))).......(((((.((........)).))))).........)))...)))).).)).. ( -32.60) >consensus CCUGUGUGUGCGUGCGAUGUGCGAAUAUGUUGUG____AAAAUUGAAUGGCAUAUGCACAUUUUGUCGCCAGUGAUAAAAUUUAAUAACGCUGAUAAAUUUAGCAAAAACACGCUGGAC .........(((((.(((((((..((((((..(.............)..)))))))))))))((((((....))))))...........(((((.....))))).....)))))..... (-27.65 = -27.70 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:43 2006