| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,833,946 – 3,834,037 |
| Length | 91 |
| Max. P | 0.943805 |
| Location | 3,833,946 – 3,834,037 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 78.90 |
| Mean single sequence MFE | -16.44 |
| Consensus MFE | -10.71 |
| Energy contribution | -10.43 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.943805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3833946 91 + 23771897 A-ACAACAUUAUUGUGGC-----AAAAUAAAAA----ACGAAAUA------------AUCUUAAUUGAUAAAAAAAUGGCAAGCGAAAUGUUUGCCGUUCUUCCAAUUGCGAG--- .-....(((....)))((-----((........----........------------(((......))).....((((((((((.....)))))))))).......))))...--- ( -17.10) >DroSec_CAF1 33588 90 + 1 A-ACAACAUUAUUGUGGC-----AAAAUAAAAA----ACAAAAUA------------AUCUUAAUUGAUAAA-AAAUGGCAAGCGAAAUGUUUGCCGUACUUCCAAUUGCGAG--- .-....(((....)))((-----((........----........------------(((......)))...-..(((((((((.....)))))))))........))))...--- ( -16.80) >DroSim_CAF1 33326 90 + 1 A-ACAACAUUAUUGUGGC-----AAAAUAAAAA----ACAAAAUA------------AUCUUAAUUGAUAAA-AAAUGGCAAGCGAAAUGUUUGCCGUACUUCCAAUUGCGAG--- .-....(((....)))((-----((........----........------------(((......)))...-..(((((((((.....)))))))))........))))...--- ( -16.80) >DroEre_CAF1 33927 91 + 1 A-ACAACAUUAUUGUGGU-----AAAAUAAAAA--AAGCAAAAUA------------AUGUUAAUUGAUAAA--AAUGGCAAACGAAAUGUUUGCCGUACUUCCAAAUGCGAG--- .-..(((((((((...((-----..........--..))..))))------------)))))..........--.(((((((((.....)))))))))...............--- ( -18.10) >DroYak_CAF1 34529 95 + 1 ACAAAACAUUAUUGUGGC-----AAAAUAAAAAUAAACAAAAAUA------------AUGUUAAUUGAUAAA-AAAUGGCAAACGAAAUGUUUGCCGUACUUCCAAUUGCGAG--- ....(((((((((.((..-----..............))..))))------------)))))(((((.....-..(((((((((.....))))))))).....))))).....--- ( -17.39) >DroPer_CAF1 37652 106 + 1 A-AAAAGUUUAU---AAAAAAUAGAAAUAGAAA----ACAAAAGUUUGCGAACACAUAUAGUAAUA-AAAAA-AAAUGGCAAUUGAAAUGUUUGCUGUACUGCCAAUAGCAGGCCG .-..........---..................----......((((((.....((((((((((..-.....-.(((....))).......)))))))).))......)))))).. ( -12.46) >consensus A_ACAACAUUAUUGUGGC_____AAAAUAAAAA____ACAAAAUA____________AUCUUAAUUGAUAAA_AAAUGGCAAGCGAAAUGUUUGCCGUACUUCCAAUUGCGAG___ ...........................................................................(((((((((.....))))))))).................. (-10.71 = -10.43 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:42 2006