Locus 1318

Sequence ID 3L_DroMel_CAF1
Location 3,828,198 – 3,828,297
Length 99
Max. P 0.539304
window2061

overview

Window 1

Location 3,828,198 – 3,828,297
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 81.57
Mean single sequence MFE -24.12
Consensus MFE -15.73
Energy contribution -16.40
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.65
SVM decision value 0.01
SVM RNA-class probability 0.539304
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3828198 99 - 23771897
UCUCUUAAAGCCGCUUGGCAUUCAAUUGGCAUUUGGCUGUCGCCAUCAUCCAGUCGAGUGGCCCCCACCGCCUCCUCCUUCGCCAAUCCUUCUGCCUGC
............((..((((....(((((((((((((((...........)))))))))(((.......))).........)))))).....)))).)) ( -25.90)
>DroSec_CAF1 27853 99 - 1
UCUGUUAAAGCCGCUUGGCAUUCAAUUGGCAUUUGGCUGUCGCCAUCAUCCAGUCGAGUGGCCUCCACCACCUCCUCCAUCGCCAAUCCUCCUGCCUGC
............((..((((....((((((..(((((((...........)))))))((((......))))..........)))))).....)))).)) ( -25.30)
>DroSim_CAF1 27556 99 - 1
UCUCUUAAAGCCGCUUGGCAUUCAAUUGGCAUUUGGCUGUCGCCAUCAUCCAGUCGAGUGGCCUCCACCACCUCCUCCAUCGCCAAUCCUCUUGCCUGC
............((..((((....((((((..(((((((...........)))))))((((......))))..........)))))).....)))).)) ( -26.00)
>DroEre_CAF1 28128 90 - 1
UCUCUUAAAGCCGCUUGGCAUUCAAUUGGCAUUUGGCUGUCGCCAUCAUCCAGUCGAGUUGCCUCCACCAGCU---------CCCUGCCCCCUGCCUGC
.........(((....)))........((((..((((....)))).....(((..((((((.......)))))---------).))).....))))... ( -22.10)
>DroYak_CAF1 28305 90 - 1
UCGCUUAAAGCCGCUUGGCAUUCAAUUGGCAUUUGGCUGUCGCCAUCAUCCAGUCGAGUUGCCCCCUUCUACC---------CCAAUCCUCCUGGCUGC
........(((((...(((((((.(((((....((((....))))....))))).))).))))..........---------..........))))).. ( -21.60)
>DroAna_CAF1 27286 91 - 1
UCUCUUAAAGCCGCUUGGCAUUCAAUUGGCAUUUGGCUGUCGCCAUCAUCCAGUG--------UCCGCGUCCCAUUCCGCCGCCGCUGCCGCCUCCUGG
.........(((....)))...((...(((...((((....)))).....(((((--------.(.(((........))).).)))))..)))...)). ( -23.80)
>consensus
UCUCUUAAAGCCGCUUGGCAUUCAAUUGGCAUUUGGCUGUCGCCAUCAUCCAGUCGAGUGGCCUCCACCACCUCCUCC_UCGCCAAUCCUCCUGCCUGC
.........(((....)))((((.(((((....((((....))))....))))).))))........................................ (-15.73 = -16.40 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:41 2006