| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,820,415 – 3,820,508 |
| Length | 93 |
| Max. P | 0.574081 |
| Location | 3,820,415 – 3,820,508 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 74.31 |
| Mean single sequence MFE | -22.91 |
| Consensus MFE | -16.26 |
| Energy contribution | -17.12 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.86 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3820415 93 + 23771897 ACUACGCCCAAUGGGGCUGCGCCCUACUGCGCCACCACAUAUCAGCAGGGGGUGAGUCUAUCUAGGGA-UACCAUACCAUUAUAUUCUCAAU--CU .........(((((((((.((((((.((((..............))))))))))))))......((..-..))...)))))...........--.. ( -26.24) >DroSec_CAF1 20099 92 + 1 ACUACGCCCAAUGGGGCUGCGCCCUACUGCGCCACCACAUAUCAGCAGGGGGUGAGUCUAUCUAGAGA-UACCAAA---UUAUAUUCACGAUAUGU (((.(((((..((((((...))))))((((..............)))).)))))))).((((....))-)).....---................. ( -23.54) >DroEre_CAF1 20526 91 + 1 ACUACGCCCAAUGGGGCUGCGCCCUACUGCGCCACCACAUAUCAGCAGGGGGUGAGUCCAUCUAGAGUCCAUCAUA---UUAUAUUCACAAU--CU .............(((((.((((((.((((..............))))))))))))))).................---.............--.. ( -22.94) >DroYak_CAF1 20561 90 + 1 ACUACGCCCAAUGGCGCUGCGCCCUACUGCGCCACCACAUAUCAGCAGGGGGUGAGUCCAUCUAGAGA-AAUCAUA---UUGUAUUCACUAU--UU ..(((.....((((.(((.((((((.((((..............)))))))))))))))))...((..-..))...---..)))........--.. ( -23.14) >DroAna_CAF1 19339 81 + 1 ACGGCGCCCAACGGGGCAGCGCCCUACUGCGCCACAACAUAUCAGCAAGGGGUGAGGAGAUGAUCUC---UUUAAA---AUAUAUAG--------- ...((((((....)))).))(((((..(((..............))).)))))((((((.....)))---)))...---........--------- ( -23.74) >DroPer_CAF1 22841 79 + 1 ACCACCCCGAACGGGGCGACUCCUUACUGCGCCACCACAUAUCAGCAGGGGGUAAGCAUG-----------CCAUU---UUCUGU-CUCUGU--CU ....((((....)))).(((......((((..............))))..((((....))-----------))...---....))-).....--.. ( -17.84) >consensus ACUACGCCCAAUGGGGCUGCGCCCUACUGCGCCACCACAUAUCAGCAGGGGGUGAGUCUAUCUAGAGA__ACCAUA___UUAUAUUCACAAU__CU .....((((....))))..((((((.((((..............)))))))))).......................................... (-16.26 = -17.12 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:38 2006