Locus 1315

Sequence ID 3L_DroMel_CAF1
Location 3,818,098 – 3,818,202
Length 104
Max. P 0.681786
window2056

overview

Window 6

Location 3,818,098 – 3,818,202
Length 104
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 83.54
Mean single sequence MFE -14.60
Consensus MFE -11.17
Energy contribution -11.83
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.76
SVM decision value 0.31
SVM RNA-class probability 0.681786
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3818098 104 + 23771897
UGCCAAUUGGCAGCCUCCUCAUUGAUCCGCAAACCCUCCAACCAAUUGUCAAUGCAGACGGGUAAUUUACAAAAACUAAA-CCA-AGAA-------------AAUUAAACCACACAAAC
((((....))))((((.(((((((((.....................))))))).))..)))).................-...-....-------------................. ( -14.10)
>DroVir_CAF1 20035 103 + 1
UGCCAAUUGGCAGCGUCCUCAUUGAUCCGCAAACCCUCCAACCAAUUCUCAAUGCAGACGGGUAAUUUACAAAAAACAAAAACACACCA-------------AA---AAAUCCAGCAAC
((((....))))(((((..((((((.......................))))))..)))((((..........................-------------..---..)))).))... ( -15.91)
>DroPse_CAF1 19657 117 + 1
UGCCAAUUGGCAGCCUCCUCAUUGAUCCGCAAACCCUCCAACCAAUUGUCAAUGCAGACGGGUAAUUUACAAAAACUAAA-CCA-CAAAAAAUACGAAAAAAAUUUUAACCACACAAAC
((((....))))((((.(((((((((.....................))))))).))..)))).................-...-.................................. ( -14.10)
>DroGri_CAF1 18598 101 + 1
UGCCAAUUGGCAGCGUCCUCAUUGAUCCGCAAACCCUCCAACCAAUUCUCAAUGCAGACGGGUAAUUUACAAAAACCAAAAACACACCA-------------A-----AAUCCAACAAC
((((....)))).((((..((((((.......................))))))..))))(((...........)))............-------------.-----........... ( -15.30)
>DroAna_CAF1 16770 115 + 1
UGCCAAUUGGCAGCCUCCUCAUUGAUCCGCAAACCCUCCAACCAAUUGUCAAUGCAGACGGGUAAUUUACAAAAACUAAA-CCA-AAAAAAAAA--AAAACAAAUUAAACCACACAAAC
((((....))))((((.(((((((((.....................))))))).))..)))).................-...-.........--....................... ( -14.10)
>DroPer_CAF1 19998 117 + 1
UGCCAAUUGGCAGCCUCCUCAUUGAUCCGCAAACCCUCCAACCAAUUGUCAAUGCAGACGGGUAAUUUACAAAAACUAAA-CCA-CAAAAAAUACGAAAAAAAUUUUAACCACACAAAC
((((....))))((((.(((((((((.....................))))))).))..)))).................-...-.................................. ( -14.10)
>consensus
UGCCAAUUGGCAGCCUCCUCAUUGAUCCGCAAACCCUCCAACCAAUUGUCAAUGCAGACGGGUAAUUUACAAAAACUAAA_CCA_AAAA_____________AAUU_AACCACACAAAC
((((....))))((((.(((((((((.....................))))))).))..))))........................................................ (-11.17 = -11.83 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:37 2006