Locus 1314

Sequence ID 3L_DroMel_CAF1
Location 3,817,786 – 3,817,896
Length 110
Max. P 0.715178
window2055

overview

Window 5

Location 3,817,786 – 3,817,896
Length 110
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 80.08
Mean single sequence MFE -35.38
Consensus MFE -23.84
Energy contribution -24.48
Covariance contribution 0.64
Combinations/Pair 1.10
Mean z-score -1.55
Structure conservation index 0.67
SVM decision value 0.39
SVM RNA-class probability 0.715178
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3817786 110 + 23771897
ACUCC------CCACC--GUCCAGCUACAAGACGCGCACCCAGUCGGUGCGCUCCGACUCCGUAACUCCAUCGCCCACGGGUUACGGCAGCGACAGGCAGACGCCGGAGUUAAACCAU
(((((------....(--(((..(((....((.(((((((.....)))))))))((.(((((((((((..........))))))))).))))...))).))))..)))))........ ( -41.10)
>DroVir_CAF1 19758 99 + 1
-------------------ACCAGCUACAAGACACGCACCCAAUCCGUGCGCUCCGAUUCCGUAACGCCCUCGCCCACGGGCUAUGGCAGCGACAGGCAGACGCCGGAGUUCAGCCAG
-------------------....(((.........((((.......))))(((((.....(((...(((...(((....)))...))).)))...(((....))))))))..)))... ( -30.80)
>DroPse_CAF1 19324 116 + 1
ACCCCCCUCCAACCAA--CUCCAGCUACAAGACACGCACCCAGUCGGUGCGCUCCGAUUCCGUCACGCCCUCGCCCACCGGCUACGGCAGCGACCGGCAGACACCGGAGCUCAGUCAG
................--............(((..(((((.....)))))((((((.....(((..(((.((((...(((....)))..))))..))).)))..))))))...))).. ( -37.70)
>DroGri_CAF1 18329 100 + 1
------------------AUCCAGCUACAAGACACGCACCCAAUCCGUGCGCUCCGAUUCGGUAACGCCGUCGCCCACUGGCUACGGCAGCGACAGGCAGACGCCGGAGUUCAGCCAG
------------------.....(((.........((((.......))))(((((...(((.(...(((((.(((....))).)))))).)))..(((....))))))))..)))... ( -33.60)
>DroWil_CAF1 26405 112 + 1
ACCUA------CCACCUACCCCAGCUACAAGACACGCACCCAAUCCGUGCGCUCCGAUUCCGUCACGCCCUCGCCUACCGGCUACGGCAGCGACAGGCAGACGCCGGAGCUAAAUCAA
.....------........................((((.......))))((((((....((((..(((.((((...(((....)))..))))..))).)))).))))))........ ( -33.40)
>DroAna_CAF1 16482 113 + 1
AUCCCCCU---CCAUC--GUCCAGCUACAAGACACGGACACAGUCCGUGCGCUCCGAUUCCGUGACUCCCUCACCCACCGGCUACGGCAGCGACAGGCAGACGCCGGAGCUGAAUCAU
......((---((..(--(((..(((......(((((((...)))))))(((((((...(((((...........)).)))...))).))))...))).))))..))))......... ( -35.70)
>consensus
ACCCC______CCA_C__CUCCAGCUACAAGACACGCACCCAAUCCGUGCGCUCCGAUUCCGUAACGCCCUCGCCCACCGGCUACGGCAGCGACAGGCAGACGCCGGAGCUCAACCAG
...................................((((.......))))(((((.....(((...(((...(((....)))...))).)))...(((....))))))))........ (-23.84 = -24.48 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:36 2006