| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,814,481 – 3,814,573 |
| Length | 92 |
| Max. P | 0.668498 |
| Location | 3,814,481 – 3,814,573 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 74.83 |
| Mean single sequence MFE | -23.59 |
| Consensus MFE | -11.43 |
| Energy contribution | -12.68 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.668498 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3814481 92 + 23771897 AACCUGGCUUGCUUUUAAGUAGU---------AAGUGUGGAAAAAUUGUAAGAAAUUUCCGGAACUCUUGUGGUGCGGAAGAUGGUUAAAAACCAUCUAAG ..((..(((((((.......)))---------))))..)).................((((..(((.....))).))))(((((((.....)))))))... ( -23.50) >DroSec_CAF1 14297 91 + 1 AAGCUGGCUUGCUUUUAAGUAGU---------AAGUAUGGAAAAAUUGUAAGAAGUUUCCGGAACUCUUGUGGUCCGGAAGCU-AUUAAAAACCAUCCAAG ......(((((((.......)))---------)))).((((.......(((..((((((((((.(......).))))))))))-.))).......)))).. ( -26.94) >DroSim_CAF1 14319 91 + 1 AAGCUGGCUUGCUUUUAAGUACU---------AAGUGUGGAAAAAUUGUAAGAAGUUUCCGGAACUCUUGUGGUCCGGAAGCU-AUUAAAAACCAUCCAAG ..(((.(((((....)))))...---------.))).((((.......(((..((((((((((.(......).))))))))))-.))).......)))).. ( -23.94) >DroEre_CAF1 14679 85 + 1 ACGCUUACUUGUAAGUUAGUU--ACUUGUAGUAAGUGUGGAA-AAUUCUAAAAAGUUUCCGAAACUCCUGUGGUCCG-AAGCU-A-----------UAAGG (((((((((...((((.....--))))..)))))))))....-..........((((((.((.((....))..)).)-)))))-.-----------..... ( -20.00) >consensus AAGCUGGCUUGCUUUUAAGUAGU_________AAGUGUGGAAAAAUUGUAAGAAGUUUCCGGAACUCUUGUGGUCCGGAAGCU_AUUAAAAACCAUCCAAG ......(((((....))))).................((((............((((((((((.(......).))))))))))............)))).. (-11.43 = -12.68 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:35 2006