Locus 1311

Sequence ID 3L_DroMel_CAF1
Location 3,811,301 – 3,811,419
Length 118
Max. P 0.645521
window2051

overview

Window 1

Location 3,811,301 – 3,811,419
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 93.71
Mean single sequence MFE -28.76
Consensus MFE -23.94
Energy contribution -23.74
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.39
Structure conservation index 0.83
SVM decision value 0.23
SVM RNA-class probability 0.645521
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3811301 118 - 23771897
AUGGACUUUGCAUAAAUAACUGAGGCAAGUCGGUGUUUGCAUCGGCAAGUAAUGAAAUCUUGAAUAAGGGGGCUACUAUUCUUUGCGUUUAUAUAAUUAAAAAUUGCUGUGUGAAGUU
...(((((..(((..........((((((((((((....)))))))..((((.(((..(((.....)))((....)).))).)))).................))))))))..))))) ( -26.20)
>DroSec_CAF1 11143 118 - 1
AUGGACUUUGCAUAAAUAACUGAGGCAAGUCGGUGUUUGCAUCGGCAAGUAAUGGAAUCUUGAAUAAGGGGGCUACUGUUCUUUUCGUUUAUAUAAUUAAAAAUUUCUGUGCGAAGUU
...(((((((((((.....(((..((..(((((((....)))))))..))..))).....(((((((((((((....)))))))).)))))................))))))))))) ( -30.80)
>DroSim_CAF1 11137 118 - 1
AUGGACUUUGCAUAAAUAACUGAGGCAAGUCGGUGUUUGCAUCGGCAAGUAAUGGAAUCUUGAAUAAGGGGGCUACUGUUCUUUUCGUUUAUAUAAUUAAAAAUUUCUGUGCGAAGUU
...(((((((((((.....(((..((..(((((((....)))))))..))..))).....(((((((((((((....)))))))).)))))................))))))))))) ( -30.80)
>DroEre_CAF1 11509 115 - 1
AUGGACUUUGCAUAAAUAACUGUGGCAAGUCGGUGUUUGCAUCGGCAAGUAAAGGAAUCUUGGGUAAGGGGGCUA---UUCUUUUCGUUUAUAUAAUUACAAUUUUCUGUGUGAAGUU
...(((((..((((...((.(((((...(((((((....)))))))..(((((.(((.....(((......))).---.....))).)))))....))))).))...))))..))))) ( -29.10)
>DroYak_CAF1 11679 115 - 1
AUGGACUUUGCAUAAAUAACUGAGGCAAGUCGGUGUUUGCAUCGGCAAGUAAAGGAAUCUCGGGUAAGGGGGCUA---UUCUUUUCGUUUAUAUAAUUAAAAUUUUCUGUGUGAAGUU
...(((((..((((..............(((((((....)))))))..(((((.(((.....(((......))).---.....))).)))))...............))))..))))) ( -26.90)
>consensus
AUGGACUUUGCAUAAAUAACUGAGGCAAGUCGGUGUUUGCAUCGGCAAGUAAUGGAAUCUUGAAUAAGGGGGCUACU_UUCUUUUCGUUUAUAUAAUUAAAAAUUUCUGUGUGAAGUU
...(((((((((((.........(((..(((((((....)))))))...........((((......))))))).............((((......))))......))))))))))) (-23.94 = -23.74 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:32 2006