Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,806,422 – 3,806,517 |
Length | 95 |
Max. P | 0.960328 |
Location | 3,806,422 – 3,806,517 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 73.68 |
Mean single sequence MFE | -27.58 |
Consensus MFE | -13.98 |
Energy contribution | -15.23 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.33 |
Mean z-score | -2.17 |
Structure conservation index | 0.51 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.960328 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3806422 95 - 23771897 AACACGGAGAGAUUGCUCUCCAGCGAAA--------GAGAGGGGGCUAGCCGGAGCGAAAGAGUGGGCU-AUAUGCGAAUAGAAAAAGAGAG---GUUCAUACCCCG .....((((((....))))))..(....--------)...(((((((((((.(..(....)..).))))-)...))((((............---))))...)))). ( -33.10) >DroSec_CAF1 6305 95 - 1 AACACGGAGAGAUUGCUCUCCAGCGAAA--------GAGAGGGGGCUAGCCGGAGCGAAAGAGUGGGCU-AUAUGCGAAUAGAAAAAGAGAG---GUUCAUACCCCG .....((((((....))))))..(....--------)...(((((((((((.(..(....)..).))))-)...))((((............---))))...)))). ( -33.10) >DroSim_CAF1 6245 81 - 1 AACACGGAGAGAUUGCUCUCCAGCGAAA--------GAGAGGGGGCUAGCCGGAGCGAAAGAGUGG---------------GAAAAAGAGAG---GUUUAUACCCCG .....((((((....))))))..(....--------)...((((...((((....(....).....---------------..........)---)))....)))). ( -23.11) >DroEre_CAF1 6675 103 - 1 AACACGGAGAGAUUGCUCUCCAGUGAAAGAGAGAGAGAGAGGGGGCUAGCCGGAGCGAAAGAGUGGGCC-GUAUGCGAAUAGAAAAAGAGAG---GUUUAUAUCCCG ..(((((((((....)))))).)))...............((((....(((.(..(....)..).)))(-(....))...............---.......)))). ( -27.70) >DroYak_CAF1 6797 95 - 1 AACGCAGAGAGAUUGCUCUCCAGCGACA--------GAGAGGGGGCUAGCCGGAGCGAAAGAGUGGGCG-AUAUGCGAAUAGAAAAGGAGAG---GUUUAUAUCCCG ..(((((((((....))))).(((..(.--------.....)..))).(((.(..(....)..).))).-...)))).........((.((.---.......)))). ( -26.00) >DroMoj_CAF1 7835 90 - 1 AGCGUAGACAGAGCG------AGAGAGA--------GAGAGAGAGCGACUUUGUUUGUAUGUGUGCGCUUGUCUGUGU---GGUAAAGAGAGUGUGCGCCUGCCUGU .....((((((((((------.......--------.........)).))))))))(((.(((..(((((.(((....---.....))))))))..))).))).... ( -22.49) >consensus AACACGGAGAGAUUGCUCUCCAGCGAAA________GAGAGGGGGCUAGCCGGAGCGAAAGAGUGGGCU_AUAUGCGAAUAGAAAAAGAGAG___GUUCAUACCCCG .....((((((....))))))...................((((....(((.(..(....)..).)))...................(((......)))...)))). (-13.98 = -15.23 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:31 2006