Locus 1308

Sequence ID 3L_DroMel_CAF1
Location 3,805,615 – 3,805,716
Length 101
Max. P 0.760024
window2048

overview

Window 8

Location 3,805,615 – 3,805,716
Length 101
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 94.79
Mean single sequence MFE -22.93
Consensus MFE -18.96
Energy contribution -19.56
Covariance contribution 0.60
Combinations/Pair 1.09
Mean z-score -1.56
Structure conservation index 0.83
SVM decision value 0.50
SVM RNA-class probability 0.760024
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3805615 101 - 23771897
CAAAGCAAAGUCAACUCUUGCCCUGGUGAAUCCAUCCACUUUGGACCC-CCUUAACCCACCGGUGACC-CCCUGUCACCUGCUUAACACCUCGACGGCUGUAC
...(((...(((..(....)....((((..((((.......))))...-............((((((.-....)))))).......))))..))).))).... ( -22.80)
>DroSec_CAF1 5469 101 - 1
CAAAGCAGAGUCAACUCUUGCCCGGGUGAAUCCAUCCACUUUGGACCC-CCUUAACCCACCGCUGACC-CCCUGUCACCUGCUUAACACCUCGACGGCUGUAC
..((((((...........((..((((.......(((.....)))...-.....))))...))((((.-....)))).)))))).(((((.....)).))).. ( -21.46)
>DroSim_CAF1 5437 101 - 1
CAAAGCAGAGUCAACUCUUGCCCGGGUGAAUCCAUCCACUUUGGACCC-CCUUAACCCACCGGUGACC-CCCUGUCACCUGCUUAACACCUCGACGGCUGUAC
....((((((....)))..(((((((((..((((.......))))...-............((((((.-....)))))).......)))).))..)))))).. ( -26.90)
>DroEre_CAF1 5909 101 - 1
CAAAGCAGAGUCAACUCUUGCCCGGGUGAAUCCAUCCACUUUGGAUCC-CCUUAACCCACCGGUGACC-CCCUGUCACUUGCUUAACACCUCGACGUCUGUAU
....((((((((...........(((.((.((((.......)))))))-))..........((((((.-....)))))).............))).))))).. ( -26.30)
>DroYak_CAF1 5907 103 - 1
CAAAGCAAAGUCAACUCUUGCCCGGCUGAAUCCAUCCACUUUGGAUCCCCCUUAACCCACCGGUGGCCCCCCUGUCACUUGCUUAACACCUCGACGACUGUAC
....(((..(((...........((..((.((((.......))))))..))..........((((((......)))))).............)))...))).. ( -17.20)
>consensus
CAAAGCAGAGUCAACUCUUGCCCGGGUGAAUCCAUCCACUUUGGACCC_CCUUAACCCACCGGUGACC_CCCUGUCACCUGCUUAACACCUCGACGGCUGUAC
....((((((....))).))).((((((..((((.......))))................((((((......)))))).......)))).)).......... (-18.96 = -19.56 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:29 2006