Locus 1306

Sequence ID 3L_DroMel_CAF1
Location 3,801,179 – 3,801,282
Length 103
Max. P 0.600458
window2043

overview

Window 3

Location 3,801,179 – 3,801,282
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 81.67
Mean single sequence MFE -33.17
Consensus MFE -22.94
Energy contribution -22.67
Covariance contribution -0.27
Combinations/Pair 1.27
Mean z-score -1.49
Structure conservation index 0.69
SVM decision value 0.14
SVM RNA-class probability 0.600458
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3801179 103 + 23771897
GCAUCAUCCUGAUCGGCGAGAUCGGAGGCGUUGCCGAGGAGAAGGCUGCCGACUACCUGACCGAGUACAAUUCGGUAUGAGAAGCCAUCACGGAUCAAUGUAU
((((.((((((((.(((....(((..((((..(((........)))))))..)......(((((((...)))))))..))...))))))).))))..)))).. ( -34.20)
>DroSec_CAF1 1013 103 + 1
GCAUCAUCCUGAUCGGCGAGAUCGGAGGCGUGGCCGAGGAGAAGGCUGCCGACUACCUGACCGAGUACAAUUCGGUAUGAGACGCCAUUCUAGAUAAAUCCUU
..(((...((((((.....)))))).(((((((((........)))).....((.....(((((((...)))))))...)))))))......)))........ ( -31.00)
>DroSim_CAF1 1014 103 + 1
GCAUCAUCCUGAUCGGCGAGAUCGGAGGCGUGGCCGAGGAGAAGGCUGCCGACUACCUGACCGAGUACAAUUCGGUAGGAGAAGCCAUUCUAGAUCAAUCCUU
(.(((...((((((.....)))))).((((..(((........)))..)...((.((((.((((((...))))))))))))..)))......))))....... ( -34.50)
>DroEre_CAF1 1188 103 + 1
GCAUCAUUCUGAUCGGCGAGAUCGGAGGCGUGGCCGAGGAGAAGGCGGCCGACUACCUGACCGAGUACAAUUCGGUAGGAAAUGCCAUGCCGAAACAAUCGUU
((((...(((((((.....)))))))((((((((((.........))))).....((((.((((((...))))))))))..)))))))))(((.....))).. ( -38.90)
>DroWil_CAF1 3092 101 + 1
GCAUUAUACUGAUUGGUGAAAUCGGUGGUGUGGCCGAAGAGAAGGCUGCCGACUAUUUGACUGAAUUCAAUACGGUAUGA-AUGACAUUG-AUAACAAUGAAU
.((((((((((((((((.((((.(((.(.(..(((........)))..)).))))))).))......)))).))))))).-))).(((((-....)))))... ( -27.90)
>DroAna_CAF1 894 96 + 1
GAAUCAUCCUGAUCGGAGAGAUUGGUGGUGUGGCCGAGGAGAAGGCUGCCGACUACCUCACCGAAUACAAUUCGGUACGAAAAGUG-----UGAUA--UAUUU
..((((..((..(((..(((..((((.(.(..(((........)))..)).)))).)))(((((((...))))))).)))..))..-----)))).--..... ( -32.50)
>consensus
GCAUCAUCCUGAUCGGCGAGAUCGGAGGCGUGGCCGAGGAGAAGGCUGCCGACUACCUGACCGAGUACAAUUCGGUAUGAGAAGCCAUUC_AGAUCAAUCCUU
........((((((.....)))))).(((((((((........))))))..........(((((((...))))))).......)))................. (-22.94 = -22.67 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:25 2006