Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,800,318 – 3,800,438 |
Length | 120 |
Max. P | 0.857322 |
Location | 3,800,318 – 3,800,438 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.22 |
Mean single sequence MFE | -52.20 |
Consensus MFE | -43.49 |
Energy contribution | -42.44 |
Covariance contribution | -1.05 |
Combinations/Pair | 1.44 |
Mean z-score | -2.29 |
Structure conservation index | 0.83 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857322 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3800318 120 - 23771897 UGGUGGCACAUAGAUGACGGUGGCAUGUGGAUCGGUGGCCUUCUUGGCCUCCGCCACCGAAGCGAAGACGGGCAGUCCCAGAUGCUGGGUGCCUCCCUUCUUGGGGGAAAUGCCGCCGAC .(((((((.........(((((((..(.....)((.((((.....)))).)))))))))...........((((..(((((...)))))))))(((((.....)))))..)))))))... ( -56.60) >DroVir_CAF1 158 120 - 1 UGGCGGCACAUAGAUGACCGUGGCAUGUGGAUCCGUUGCCUUUUUCGCUUCCGCAACGGAGGCAAACACCGGCAGGCCCAAAUGCUGAGUGCCGCCCUUUUUGGGCGAAAUGCCGCCAAC ((((((((.............((((((((..((((((((.............))))))))......)))(((((........))))).)))))((((.....))))....)))))))).. ( -51.22) >DroGri_CAF1 158 120 - 1 CGGUGGCACAUAGAUAACAGUGGCAUGCGGAUCCGUUGCCUUCUUCGCAUCGGCCACAGAGGCAAAAACGGGCAGACCCAAAUGCUGAGUGCCGCCCUUCUUGGGUGAAAUGCCGCCGAC ((((((((.............(((((.(((.....(((((((....((....))....)))))))....(((....))).....))).)))))((((.....))))....)))))))).. ( -46.10) >DroWil_CAF1 1837 120 - 1 UGGUGGCACAUAGAUAACCGUGGCAUGGGGAUCGGUUGCCUUUUUGGCCUCGGCGACGGUGGCAAAAACGGGCAGACCCAAAUGUUGGGUGCCACCCUUUUUGGGUGAGAUGCCGCCAAC (((((((((...(((..((((...))))..)))..((((((((((.((((((....))).))).)))).))))))(((((.....)))))..(((((.....))))).).)))))))).. ( -52.00) >DroMoj_CAF1 158 120 - 1 UGGUGGCACAUAGAUGACCGUGGCAUGGGGAUCCGUUGCCUUUUUGGCUUCCGCAACGGAGGCAAAGACGGGCAGGCCCAAAUGCUGAGUGCCGCCCUUUUUGGGCGAAAUGCCACCAAC ((((((((.............(((((.(((..((..(((((((((.(((((((...))))))).)))).))))))))))..)))))......(((((.....)))))...)))))))).. ( -53.00) >DroAna_CAF1 158 120 - 1 UGGCGGUACAUAGAUAACGGUGGCAUGUGGAUCGGUGGCCUUCUUGGCCUCGGCAACCGAGGCGAAGACGGGCAGUCCCAGGUGCUGGGUGCCGCCCUUUUUGGGUGAAAUGCCUCCAAC (((.(((((((.((.((.((((((((.((((((((..((((((((.(((((((...))))))).)))).))))....)).))).))).)))))))).)).))..)))...)))).))).. ( -54.30) >consensus UGGUGGCACAUAGAUAACCGUGGCAUGUGGAUCCGUUGCCUUCUUGGCCUCCGCAACGGAGGCAAAGACGGGCAGACCCAAAUGCUGAGUGCCGCCCUUUUUGGGUGAAAUGCCGCCAAC ((((((((.............(((((.....((((((((.............))))))))((((.....(((....)))...))))..)))))((((.....))))....)))))))).. (-43.49 = -42.44 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:23 2006