Locus 1303

Sequence ID 3L_DroMel_CAF1
Location 3,784,207 – 3,784,327
Length 120
Max. P 0.548937
window2040

overview

Window 0

Location 3,784,207 – 3,784,327
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.47
Mean single sequence MFE -22.45
Consensus MFE -15.09
Energy contribution -15.65
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -1.56
Structure conservation index 0.67
SVM decision value 0.03
SVM RNA-class probability 0.548937
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3784207 120 + 23771897
UAGACCAUUGCGUUUCGGUCGCUGGAUUUGCUAUCCAGUAUUUACUACAAAUAUUACACUAAAAUCGUUAGAAAUAAAUUUUCUUUAGAAAAUACACACUGAAUUGUUUACCAUUUCAGC
..((((..........))))(((((((.....))))))).........................((...(((((.....)))))...)).........(((((.((.....)).))))). ( -22.60)
>DroSec_CAF1 181828 114 + 1
UAGACCAUUGCGUUUAGGUCGCUGGAUUUGCUAUCCAGUAUUUACUACAAAUAUUACACUAAGAUCGCUAGAAAUAAAUUUUCUUUAGAAAUUACACACUGAAUUGUU------UUUAGC
..((((..........))))(((((((.....)))))))...........................(((((((((((......(((((..........))))))))))------)))))) ( -22.60)
>DroSim_CAF1 176413 114 + 1
UAGACCAUUGCGUUUAGGUCGCUGGAUUUGCUAUCCAGUAUUUACUACAAAUAUUACACUAAGAUCGCUGGAAAUAAAUUUUCUUUCGAAAUUACACACUGAAUUGUU------UUUAGC
..((((..........))))(((((((.....)))))))....................(((..(((..(((((.....)))))..)))..)))....(((((.....------))))). ( -22.00)
>DroEre_CAF1 176497 108 + 1
UAGACCAUUGCGUUUAGGUCGCUGGAUUUGAUAUCCAGUACUUAUUGCAAAUACA--ACUAAAAUCGCGAAACACCCAUUUGCUUUAGAAUAUACACACAGUAUUAUU------UU----
.......(((((..(((((.(((((((.....)))))))))))).))))).....--.(((((...(((((.......))))))))))...((((.....))))....------..---- ( -22.60)
>consensus
UAGACCAUUGCGUUUAGGUCGCUGGAUUUGCUAUCCAGUAUUUACUACAAAUAUUACACUAAAAUCGCUAGAAAUAAAUUUUCUUUAGAAAAUACACACUGAAUUGUU______UUUAGC
..((((..........))))(((((((.....))))))).........................((...(((((.....)))))...))............................... (-15.09 = -15.65 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:21 2006