Locus 1301

Sequence ID 3L_DroMel_CAF1
Location 3,781,162 – 3,781,252
Length 90
Max. P 0.731088
window2037

overview

Window 7

Location 3,781,162 – 3,781,252
Length 90
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 87.96
Mean single sequence MFE -34.44
Consensus MFE -23.64
Energy contribution -24.68
Covariance contribution 1.04
Combinations/Pair 1.17
Mean z-score -2.28
Structure conservation index 0.69
SVM decision value 0.42
SVM RNA-class probability 0.731088
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3781162 90 - 23771897
UCGCCUGCAACCCCACGACUCUUCC-CU-UUCGCUCAAAUGCUUCUUGGCAUUUCUCCCACGGAAAAUGGGGGCGGUGGGACAGGACGGAAA
(((((((....(((((((....)).-..-..((((((((((((....)))))))...(((.......))))))))))))).)))).)))... ( -28.80)
>DroSec_CAF1 178758 91 - 1
UCGCCUGCAACCCCACCACCCUUCCCCU-UUCGCUCAAAUGCUUCUUGGUACUUCUCCCACGGAAAAUGGGGGCGGUGGGGCAGGGCGGAAA
((((((....(((((((.(((((.....-...((......))(((((((........))).))))...))))).)))))))..))))))... ( -37.60)
>DroSim_CAF1 173325 91 - 1
UCGCCUGCAACCCCACCACCCUUCCCCU-UUCGCUCAAAUGCUUCUUGGCAUUUCUCCCACGGAAAAUGGGGGCGGUGGGGCAGGGCGGAAA
((((((....(((((((.(((((....(-((((...(((((((....)))))))......)))))...))))).)))))))..))))))... ( -40.60)
>DroEre_CAF1 173225 90 - 1
UUGCCUGCAACCCCAAGUCUCUCCCCCC-UUCGCUCAAAUGCUUCUUGGCAUUUCUCCCACGGAAAAUGG-GGCGGUGGGGCAGAGACGAAA
................((((((.((((.-.(((((((((((((....))))))).(((...))).....)-))))).)))).)))))).... ( -33.80)
>DroYak_CAF1 163641 92 - 1
UCGCCUGCAACCCCAAGUCUCCCCCCUCUUUCGCUCAACUGUUUCUUGGCAUUUCGCCCACGGAAAAUGGGGGCGGUGGGGCUGGGCCGUAA
..(((((...(((((...((.(((((..((((((......)).....(((.....)))....))))..))))).))))))).)))))..... ( -31.40)
>consensus
UCGCCUGCAACCCCACGACUCUUCCCCU_UUCGCUCAAAUGCUUCUUGGCAUUUCUCCCACGGAAAAUGGGGGCGGUGGGGCAGGGCGGAAA
((((((....(((((....((.(((((..((((...(((((((....)))))))......))))....))))).)))))))..))))))... (-23.64 = -24.68 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:18 2006