Locus 130

Sequence ID 3L_DroMel_CAF1
Location 414,730 – 414,824
Length 94
Max. P 0.874999
window183

overview

Window 3

Location 414,730 – 414,824
Length 94
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 87.51
Mean single sequence MFE -24.48
Consensus MFE -18.95
Energy contribution -18.71
Covariance contribution -0.24
Combinations/Pair 1.05
Mean z-score -1.99
Structure conservation index 0.77
SVM decision value 0.89
SVM RNA-class probability 0.874999
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 414730 94 - 23771897
UCGCCGAUAAACAGGAAGGACUUUUAAUGAACUAGGCAUUUCAUCAUCUUCCUGAGGAAGAAGAGAUUUAAAAAA---------------AUCUGAGUCAGGUGAUGUU
(((((......((((((((......((((.......))))......)))))))).....((..((((((....))---------------))))...)).))))).... ( -23.10)
>DroSec_CAF1 61638 94 - 1
UCGCCGAUAAACAGGAAGGACUUUUAAUGAACUAGGCAUUUCAUCAUCUUCCUGAGGAAGAAGAGAUUUAAAAGA---------------AUCUGAAUCUGGUGAUGUU
(((((......((((((((......((((.......))))......)))))))).........(((((((.....---------------...)))))))))))).... ( -23.20)
>DroSim_CAF1 63773 94 - 1
UCGCCGAUAAACAGGAAGGACUUUUAAUGAACUAGGCAUUUCAUCAUCUUCCUGAGGAAGAAGAGAUUUAAAAAA---------------AUCUGAAUCUGGUGAUGUU
(((((......((((((((......((((.......))))......)))))))).........(((((((.....---------------...)))))))))))).... ( -23.20)
>DroEre_CAF1 65897 108 - 1
UCGCCGAUAAACAGGAAGGACUU-UAAUGAACUAGGCAUUUCAUCAUCUUCCUGAGGAAAAAGAGAUUUGGAGAAACAAAUUCGUUACGAAUCUGAGCCAGGUGAUGUU
(((((......((((((((....-.((((.......))))......)))))))).((......(((((((..(((.....)))....)))))))...)).))))).... ( -26.80)
>DroYak_CAF1 66080 97 - 1
UCGCCGAUAAACAGGAAGGACUUUUAAUGAACUAGGCAUUUCAUCAUCUUCCUGGGGAAAAAGAGAUUUGGAAAAACA------------CUCUUAGCCAGGUGAUGUU
(((((......((((((((......((((.......))))......)))))))).((...(((((.(((....)))..------------)))))..)).))))).... ( -26.10)
>consensus
UCGCCGAUAAACAGGAAGGACUUUUAAUGAACUAGGCAUUUCAUCAUCUUCCUGAGGAAGAAGAGAUUUAAAAAA_______________AUCUGAGUCAGGUGAUGUU
(((((......((((((((......((((.......))))......)))))))).((....(((...........................)))...)).))))).... (-18.95 = -18.71 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:22 2006