Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 45,730 – 45,845 |
Length | 115 |
Max. P | 0.901496 |
Location | 45,730 – 45,825 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -16.31 |
Consensus MFE | -16.31 |
Energy contribution | -16.31 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.92 |
Structure conservation index | 1.00 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 45730 95 - 23771897 UGGAGGAGCCAUGCUAAAGUGGCAAUAAAAAUCAUAAUGAAGCGGCAACUUAAACAAAAUGCCAUAAAAUGCUUUAAAUGAGAACAGCGCAAAAA- .......(((((......)))))........((((..((((((((((............)))).......)))))).))))..............- ( -16.31) >DroSec_CAF1 36063 96 - 1 CGAAGGAGCCAUGCUGAAGUGGCAAUAAAAAUCAUAAUGAAGCGGCAACUUAAACAAAAUGCCAUAAAAUGCUUUAAAUGAGAACAGCGCAAAAAA .......(((((......)))))........((((..((((((((((............)))).......)))))).))))............... ( -16.31) >DroSim_CAF1 37780 96 - 1 CGAAGGAGCCAUGCUAAAGUGGCAAUAAAAAUCAUAAUGAAGCGGCAACUUAAACAAAAUGCCAUAAAAUGCUUUAAAUGAGAACAGCGCAAAAAA .......(((((......)))))........((((..((((((((((............)))).......)))))).))))............... ( -16.31) >consensus CGAAGGAGCCAUGCUAAAGUGGCAAUAAAAAUCAUAAUGAAGCGGCAACUUAAACAAAAUGCCAUAAAAUGCUUUAAAUGAGAACAGCGCAAAAAA .......(((((......)))))........((((..((((((((((............)))).......)))))).))))............... (-16.31 = -16.31 + 0.00)
Location | 45,746 – 45,845 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 96.63 |
Mean single sequence MFE | -22.17 |
Consensus MFE | -19.66 |
Energy contribution | -19.44 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.62 |
Structure conservation index | 0.89 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893834 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 45746 99 - 23771897 AUGAGAGAUGGCAACUCCUUUGGAGGAGCCAUGCUAAAGUGGCAAUAAAAAUCAUAAUGAAGCGGCAACUUAAACAAAAUGCCAUAAAAUGCUUUAAAU ((((...(((((..((((...))))..)))))(((.....)))........))))..((((((((((............)))).......))))))... ( -23.91) >DroSec_CAF1 36080 99 - 1 AUGAGACAUGGUAACUCCUUCGAAGGAGCCAUGCUGAAGUGGCAAUAAAAAUCAUAAUGAAGCGGCAACUUAAACAAAAUGCCAUAAAAUGCUUUAAAU .(.((.(((((...(((((....)))))))))))).).((((((.......((.....))...(....)..........)))))).............. ( -21.50) >DroSim_CAF1 37797 99 - 1 AUGAGACAUGGUAACUCCUUCGAAGGAGCCAUGCUAAAGUGGCAAUAAAAAUCAUAAUGAAGCGGCAACUUAAACAAAAUGCCAUAAAAUGCUUUAAAU ...((.(((((...(((((....))))))))))))...((((((.......((.....))...(....)..........)))))).............. ( -21.10) >consensus AUGAGACAUGGUAACUCCUUCGAAGGAGCCAUGCUAAAGUGGCAAUAAAAAUCAUAAUGAAGCGGCAACUUAAACAAAAUGCCAUAAAAUGCUUUAAAU ((((...(((((...((((....)))))))))(((.....)))........))))..((((((((((............)))).......))))))... (-19.66 = -19.44 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:53 2006