Locus 13

Sequence ID 3L_DroMel_CAF1
Location 45,730 – 45,845
Length 115
Max. P 0.901496
window16 window17

overview

Window 6

Location 45,730 – 45,825
Length 95
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -16.31
Consensus MFE -16.31
Energy contribution -16.31
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.92
Structure conservation index 1.00
SVM decision value 1.02
SVM RNA-class probability 0.901496
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 45730 95 - 23771897
UGGAGGAGCCAUGCUAAAGUGGCAAUAAAAAUCAUAAUGAAGCGGCAACUUAAACAAAAUGCCAUAAAAUGCUUUAAAUGAGAACAGCGCAAAAA-
.......(((((......)))))........((((..((((((((((............)))).......)))))).))))..............- ( -16.31)
>DroSec_CAF1 36063 96 - 1
CGAAGGAGCCAUGCUGAAGUGGCAAUAAAAAUCAUAAUGAAGCGGCAACUUAAACAAAAUGCCAUAAAAUGCUUUAAAUGAGAACAGCGCAAAAAA
.......(((((......)))))........((((..((((((((((............)))).......)))))).))))............... ( -16.31)
>DroSim_CAF1 37780 96 - 1
CGAAGGAGCCAUGCUAAAGUGGCAAUAAAAAUCAUAAUGAAGCGGCAACUUAAACAAAAUGCCAUAAAAUGCUUUAAAUGAGAACAGCGCAAAAAA
.......(((((......)))))........((((..((((((((((............)))).......)))))).))))............... ( -16.31)
>consensus
CGAAGGAGCCAUGCUAAAGUGGCAAUAAAAAUCAUAAUGAAGCGGCAACUUAAACAAAAUGCCAUAAAAUGCUUUAAAUGAGAACAGCGCAAAAAA
.......(((((......)))))........((((..((((((((((............)))).......)))))).))))............... (-16.31 = -16.31 +   0.00) 

alignment

Postscript

secondary structure

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dotplot

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Window 7

Location 45,746 – 45,845
Length 99
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 96.63
Mean single sequence MFE -22.17
Consensus MFE -19.66
Energy contribution -19.44
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.62
Structure conservation index 0.89
SVM decision value 0.98
SVM RNA-class probability 0.893834
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 45746 99 - 23771897
AUGAGAGAUGGCAACUCCUUUGGAGGAGCCAUGCUAAAGUGGCAAUAAAAAUCAUAAUGAAGCGGCAACUUAAACAAAAUGCCAUAAAAUGCUUUAAAU
((((...(((((..((((...))))..)))))(((.....)))........))))..((((((((((............)))).......))))))... ( -23.91)
>DroSec_CAF1 36080 99 - 1
AUGAGACAUGGUAACUCCUUCGAAGGAGCCAUGCUGAAGUGGCAAUAAAAAUCAUAAUGAAGCGGCAACUUAAACAAAAUGCCAUAAAAUGCUUUAAAU
.(.((.(((((...(((((....)))))))))))).).((((((.......((.....))...(....)..........)))))).............. ( -21.50)
>DroSim_CAF1 37797 99 - 1
AUGAGACAUGGUAACUCCUUCGAAGGAGCCAUGCUAAAGUGGCAAUAAAAAUCAUAAUGAAGCGGCAACUUAAACAAAAUGCCAUAAAAUGCUUUAAAU
...((.(((((...(((((....))))))))))))...((((((.......((.....))...(....)..........)))))).............. ( -21.10)
>consensus
AUGAGACAUGGUAACUCCUUCGAAGGAGCCAUGCUAAAGUGGCAAUAAAAAUCAUAAUGAAGCGGCAACUUAAACAAAAUGCCAUAAAAUGCUUUAAAU
((((...(((((...((((....)))))))))(((.....)))........))))..((((((((((............)))).......))))))... (-19.66 = -19.44 +  -0.22) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:53 2006