Locus 1297

Sequence ID 3L_DroMel_CAF1
Location 3,771,107 – 3,771,205
Length 98
Max. P 0.506403
window2029

overview

Window 9

Location 3,771,107 – 3,771,205
Length 98
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 92.81
Mean single sequence MFE -17.39
Consensus MFE -12.28
Energy contribution -12.36
Covariance contribution 0.08
Combinations/Pair 1.09
Mean z-score -2.31
Structure conservation index 0.71
SVM decision value -0.05
SVM RNA-class probability 0.506403
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3771107 98 - 23771897
GCGUGCUUCAGUUUGAUUUAAAUAAAUUAUUAGUGAAA-AGCAGCUGAG-AAGAGUAAAGAAUACGAAAAAGUGCAAGUAAACGCAAUAAAAAUAUUGCA
..(..(((...((((((((..........(((((....-....))))).-.........)))).)))).)))..)........((((((....)))))). ( -16.45)
>DroSec_CAF1 168630 98 - 1
GCGUGCGUCAGUUUGAUUUAAAUAAAUUAUUAGUGAAA-AGCAGCUGAG-AAAAGUAAAGAAUACGAAAAAGCGCAAGUAAACGCAAUAAAAAUAUUGCA
((.(((((...((((((((..........(((((....-....))))).-.........)))).))))...))))).))....((((((....)))))). ( -19.25)
>DroSim_CAF1 162998 98 - 1
GCGUGCGUCAGUUUGAUUUAAAUAAAUUAUUAGUGAAA-AGCAGCUGAG-AAAAGUAAAGAAUACGAAAAAGCGCAAGUAAACGCAAUAAAAAUAUUGCA
((.(((((...((((((((..........(((((....-....))))).-.........)))).))))...))))).))....((((((....)))))). ( -19.25)
>DroEre_CAF1 161327 98 - 1
GCGUGCGUUAGUUUGAUUUAAAUAAAUUAUUAGUGAAA-AGCAGCAGAG-AAAAAUAAGGAAUGCGUGAAAGCGCAAGUAAAUGCAAUAAAAAUAUUACA
((.(((.(((.(.((((((....))))))..).)))..-.)))))....-............(((((....)))))........................ ( -16.00)
>DroYak_CAF1 152717 100 - 1
GCGUGCGUCAGUUUGAUUUAAAUAAAUUAUUAGUGAAAGAGCAGCGAAGUAAAAAUAAAGAAUGCGAAAAAGCGCAAGUAAAUGCAAUAAAAAUAUUACA
((.(((.(((.(.((((((....))))))..).)))....)))))...((((...........((......))(((......)))..........)))). ( -16.00)
>consensus
GCGUGCGUCAGUUUGAUUUAAAUAAAUUAUUAGUGAAA_AGCAGCUGAG_AAAAGUAAAGAAUACGAAAAAGCGCAAGUAAACGCAAUAAAAAUAUUGCA
((.(((.(((.(.((((((....))))))..).)))....)))))..........................((....))....((((((....)))))). (-12.28 = -12.36 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:11 2006