Locus 1295

Sequence ID 3L_DroMel_CAF1
Location 3,760,015 – 3,760,112
Length 97
Max. P 0.798878
window2026

overview

Window 6

Location 3,760,015 – 3,760,112
Length 97
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 80.12
Mean single sequence MFE -27.28
Consensus MFE -13.42
Energy contribution -13.90
Covariance contribution 0.48
Combinations/Pair 1.30
Mean z-score -2.56
Structure conservation index 0.49
SVM decision value 0.61
SVM RNA-class probability 0.798878
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3760015 97 - 23771897
GAUAAGAGUUGUUUGCAUAAAACGUGAGUUUACCCAUGAUUGAUAA-GUAUUUAUUUACCGGUCGAUUGG-----GGAAUCGGAAGAUAGCUCACUAGGUUUU
.....(((((((((.(...((((....)))).(((.((((((((..-(((......)))..)))))))))-----)).....).))))))))).......... ( -27.30)
>DroSec_CAF1 157764 97 - 1
GAUAAGAGUUGUUUGCAUAAAACGUGAGUUUACCCAUGAUUGAUAA-GUAUUUAUUCACUGGUCGAUUGG-----GGUAUCGGAAGAUUGCUCACUGGGUUUU
..........((((.....))))((((((.(((((.((((((((.(-((........))).)))))))))-----))))((....))..))))))........ ( -26.50)
>DroSim_CAF1 152105 97 - 1
GAUAAGAGUUGUUUGCAUAAAACGUGAGUUUACCCAUGAUUGAUAA-GUAUUUAUUUACUGGUCGAUUGG-----GGUAUCGGAAGAUUGCUCACUGGGUUUU
..........((((.....))))((((((.(((((.((((((((.(-(((......)))).)))))))))-----))))((....))..))))))........ ( -28.80)
>DroEre_CAF1 150204 91 - 1
GAUAAGAGUUGUUUGCAUAAAACGUGAGUUUACCCAUGAUUGAUAA-GUGUUUAUUUACUGGUCGAUUGG-----GGAAUCGGAAGAUUGCUUACCA------
..........((((.....))))((((((...(((.((((((((.(-(((......)))).)))))))))-----))((((....))))))))))..------ ( -25.90)
>DroYak_CAF1 141041 97 - 1
GAUAAGAGUUGUUUGCAUAAAACGUGAGUUUACCCAUGAUUGAUAA-GUAUUUAUGUACUGGUCGAUUGG-----GGAGUCGGAAGAUUGCUCACCGGGUUUU
...................((((....))))((((..(((((((.(-((((....))))).)))))))((-----(.((((....)))).)))...))))... ( -30.20)
>DroMoj_CAF1 207309 97 - 1
GAUAAGAAAUGCCCGCAUAGAACGUGAGCUUUCAUCAUAUUGAUAAAGUCUGGCGUCUGUGUUCAAAUGGCAAACGGAGCUGCAAACUUGCUUAGAA------
.........((((.(((((((.(((.((((((.(((.....))))))).)).))))))))))......))))....((((.........))))....------ ( -25.00)
>consensus
GAUAAGAGUUGUUUGCAUAAAACGUGAGUUUACCCAUGAUUGAUAA_GUAUUUAUUUACUGGUCGAUUGG_____GGAAUCGGAAGAUUGCUCACUAGGUUUU
..........((((.....))))((((((........(((((((...(((......)))..)))))))..........(((....))).))))))........ (-13.42 = -13.90 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:08 2006