Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,750,657 – 3,750,753 |
Length | 96 |
Max. P | 0.671909 |
Location | 3,750,657 – 3,750,753 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 82.29 |
Mean single sequence MFE | -39.75 |
Consensus MFE | -31.44 |
Energy contribution | -32.03 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.28 |
Mean z-score | -1.56 |
Structure conservation index | 0.79 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671909 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3750657 96 + 23771897 ---------UCGACACUCACCGUUAUUGUUGCUGAUGGCGAAUCGCUGCUGCAGCUGCUGUGCCAGCGCCUGGUGGUGCUGGGCCAGUGGUGUUAGGGGUGGUGG ---------....(((.((((.(((....(((.(.(((((...)))))).)))((..(((..((((((((....))))))))..)))..))..))).))))))). ( -43.60) >DroVir_CAF1 188355 96 + 1 ---------CAGAGACUUACCGUUAUUAUUGCUGAUGGCGAAUCGCUGCUGCAGCUGCGCUGCCAGCGCCUGAUGAUGCUGGGCGAGCGGUGUCAGCGGUGGCGC ---------.((.((.(..((((((.......))))))..).)).))((..(.((((((((((...(((((.........))))).)))))).)))).)..)).. ( -38.10) >DroPse_CAF1 192003 96 + 1 ---------GGAUCACUCACCAUUAUUAUUGCUGAUGGCGAAUCGCUGCUGCAGCUGCUGUGCCAGCGCCUGAUGAUGCUGCGCCAGCGGUGUCAAUGGAGGCGG ---------.(((...((.((((((.......)))))).)))))((((..((((...))))..))))((((..(((((((((....)))))))))....)))).. ( -34.30) >DroEre_CAF1 140707 96 + 1 ---------GAGACACUCACCGUUAUUGUUGCUGAUGGCGAAUCGCUGCUGCAGCUGCUGUGCCAGCGCCUGGUGGUGCUGGGCCAGUGGUGUUAGGGGUGGCGG ---------(((...)))..(((((((......)))))))...(((..((.(.((..(((..((((((((....))))))))..)))..))....).))..))). ( -42.90) >DroMoj_CAF1 189692 94 + 1 -----------CUGACUUACCGUUAUUAUUGCUGAUGGCGAAUCGCUGCUGCAGCUGCUGUGCCAGCGCCUGAUGAUGCUGAGCGAGCGGCGUCAAUGGCGGCGG -----------.........((((((((....))))))))...(((((((((.((((((.((((((((.(....).))))).)))))))))))....))))))). ( -37.10) >DroAna_CAF1 143844 102 + 1 AAUUAAAAAUCUCCACUCACCGUUAUUAUUGCUGAUGGCGAAUCGCUGCUGCAGCUGUUGGGCCAAAGCCUGAUGGUGCUGGGCCAGCGGUGUGAGCG---GCGG ................((.((((((.......)))))).))..((((((((((.(((((((.(((..(((....)))..))).)))))))))).))))---))). ( -42.50) >consensus _________GAGACACUCACCGUUAUUAUUGCUGAUGGCGAAUCGCUGCUGCAGCUGCUGUGCCAGCGCCUGAUGAUGCUGGGCCAGCGGUGUCAGCGGUGGCGG ................((.((((((.......)))))).))..(((((((((.(((((((.(((((((.(....).))))).)))))))))....))))))))). (-31.44 = -32.03 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:07 2006