Locus 1293

Sequence ID 3L_DroMel_CAF1
Location 3,747,796 – 3,747,893
Length 97
Max. P 0.665692
window2024

overview

Window 4

Location 3,747,796 – 3,747,893
Length 97
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 91.97
Mean single sequence MFE -25.86
Consensus MFE -18.10
Energy contribution -18.70
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.65
Structure conservation index 0.70
SVM decision value 0.28
SVM RNA-class probability 0.665692
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3747796 97 + 23771897
UUCCUUUUUG-GAACGAAAAUAUUUUUGUUUCGCUUUUGUCGGCUUUGUUCGUCGGCGAAAUGAAGGAAAAUACAAGAGGCGAAUGUUUUCUUUUUUG
(((((((..(-((((((((....)))))))))..((((((((((.......)))))))))).)))))))....(((((((.(((....)))))))))) ( -27.40)
>DroSec_CAF1 142335 96 + 1
UUCCUUUUUG-GAACGAAAAUAUUUUGGUUUCGCUUUUGUCGGCUUUGUUCGUCGGCGAAUUGAAGGAGAAUACAAGAGGCGAAUGUUUUCUUUUUU-
((((.....)-))).((((((((((..(((((...(((((((((.......))))))))).....(.......)..)))))))))))))))......- ( -23.50)
>DroSim_CAF1 139885 96 + 1
UUCCUUUUUG-GAACGAAAAUAUUUUUGUUUCGCUUUUGUCGGCUCUGUUCGUCGGCGAAUUGAAGGAAAAUACAAGAGGCGAAUGUUUUCUUUUUU-
(((((((..(-((((((((....)))))))))...(((((((((.......)))))))))..))))))).....((((((.(((....)))))))))- ( -23.80)
>DroEre_CAF1 137903 87 + 1
UUCCGUUUUGGGAACGAAAAUAUUUUUGUUUCGCUUUUGUCGGCUUUGUUCGUCGGCGA----------AAUACAAGAGGCGAAUGUUUUCCUUUUU-
((((......)))).((((((((((..(((((..((((((((((.......))))))))----------)).....)))))))))))))))......- ( -24.50)
>DroYak_CAF1 127793 97 + 1
UUCCUUUUUGGGAACGAAAAUAUUUUUGUUUCGCUUUUGUCGGCUUUGUUCGUCGGCGAAUUGAAGGAAAAUACAAGAGGAGAAUGUUUUCCUUUUU-
(((((((...(((((((((....)))))))))...(((((((((.......)))))))))..))))))).....(((((((((....))))))))).- ( -30.10)
>consensus
UUCCUUUUUG_GAACGAAAAUAUUUUUGUUUCGCUUUUGUCGGCUUUGUUCGUCGGCGAAUUGAAGGAAAAUACAAGAGGCGAAUGUUUUCUUUUUU_
((((((((((.((((((((....))))))))....(((((((((.......))))))))).............))))))).))).............. (-18.10 = -18.70 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:06 2006