Locus 1291

Sequence ID	3L_DroMel_CAF1
Location	3,741,988 – 3,742,078
Length	90
Max. P	0.857819

overview

Window 0

Location	3,741,988 – 3,742,078
Length	90
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	92.38
Mean single sequence MFE	-20.18
Consensus MFE	-17.00
Energy contribution	-17.06
Covariance contribution	0.06
Combinations/Pair	1.19
Mean z-score	-1.56
Structure conservation index	0.84
SVM decision value	0.82
SVM RNA-class probability	0.857819
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3741988 90 + 23771897
AUGUCGCCCUUCAAGCUGAUUCGCUUGUCUCUCCAAUUAAUUUCUUAUCCUUCGAUUUUUUA---AGGUUGUUGGAGUAGUUGUUAUUGGUGA
...(((((...(((((......))))).(((((((((.....(((((.............))---)))..))))))).))........))))) ( -20.72)
>DroSec_CAF1 136678 89 + 1
AUGUCGCCCUUCAAGCUGAUUCGCUUGCCUCUC-AAUUAACUUCUAAUCCUUCGAUUUUUUA---AGAUUGUUGGAGUAGUUGUUAUUGGUGA
...(((((...(((((......)))))......-...((((..(((.(((..((((((....---))))))..))).)))..))))..))))) ( -21.80)
>DroSim_CAF1 133500 89 + 1
AUGUCGCCCUUCAAGCUGAUUCGCUUGUCUCUC-AAUUAACUUCUUAUCCUUCGAUUUUUUA---AGCUUGUUGGAGUAGCUGUUAUUGGUGA
...(((((...(((((......)))))......-...((((..((....(((((((......---.....))))))).))..))))..))))) ( -17.10)
>DroEre_CAF1 132244 89 + 1
AUGUCGCCCUUCGAGCUGAUUCGCUUGCCUCUC-AAUUAACUUCUUAUCCUUCGAUUCCUUG---AGGUUGUUGGAGUAGUUGUUAUUGGUGA
...(((((...(((((......))))).....(-(((((.((((.....((((((....)))---))).....)))))))))).....))))) ( -21.20)
>DroYak_CAF1 121941 90 + 1
AUGUCGCCCUUCAAGCUGAUUCGCUUGUCUCUC-AAUUAACUUCUUAUCCUUCGAUU--UUGAAAAGGUUGUUGAAGUAGUUGUUAUUGGUGA
...(((((...(((((......))))).....(-(((((.((((....((((((...--.)))..))).....)))))))))).....))))) ( -20.10)
>consensus
AUGUCGCCCUUCAAGCUGAUUCGCUUGUCUCUC_AAUUAACUUCUUAUCCUUCGAUUUUUUA___AGGUUGUUGGAGUAGUUGUUAUUGGUGA
...(((((...(((((......)))))..........((((..((....(((((((..(((....)))..))))))).))..))))..))))) (-17.00 = -17.06 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:02 2006