| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,740,162 – 3,740,252 |
| Length | 90 |
| Max. P | 0.612015 |
| Location | 3,740,162 – 3,740,252 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 72.44 |
| Mean single sequence MFE | -25.25 |
| Consensus MFE | -13.81 |
| Energy contribution | -14.48 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.612015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3740162 90 - 23771897 AGGGGCGAUGUGUGUGUGUGUGU----GUGA--GCGGAGAAAGGAGG--CUGCCUAAGUGCUUCGCCCAUUAAAGUAUGCAAUCAUUUUGCGGUUAGU ....((((.(((..(((((((..----(((.--((((((.....(((--...))).....)))))).)))....)))))))..))).))))....... ( -23.30) >DroGri_CAF1 126975 81 - 1 --GGGC-UGGUUGUUGA--UUGUGG--------GCA--CGAC--AAGUUCUGGCUAAGUGCUUGGCCCAUUAAAGUAUGCAAUCAUUUUGCGGUUAGC --..((-(((..(((((--((((((--------((.--...(--((((.((.....)).)))))))))..........)))))))....))..))))) ( -23.00) >DroSec_CAF1 134895 88 - 1 AGGGGUGAAGUGUGUGUGUGUGU------GU--GCGGAGAAAGGAGG--CUGCCUAAGUGCUUCGCCCAUUAAAGUAUGCAAUCAUUUUGCGGUUAGU ..((((((((..(..(.(((.((------.(--.(.......).).)--)))))...)..))))))))(((((....(((((.....))))).))))) ( -24.90) >DroSim_CAF1 131670 86 - 1 AGGGGCGAAGUGUGUGU--GUGU------GU--GCGGAGAAAGGAGG--CUGCCUAAGUGCUUCGCCCAUUAAAGUAUGCAAUCAUUUUGCGGUUAGU ..((((((((..(..(.--((((------.(--.(.......).).)--).)))...)..))))))))(((((....(((((.....))))).))))) ( -26.40) >DroEre_CAF1 130172 74 - 1 AGGGGUGAA--------------------GU--GCGGAGAAAGGAGG--CUACCUAAGUGCUUCGCCCAUUAAAGUAUGCAAUCAUUUUGCGGUUAGU ..(((((((--------------------(.--.(..((..((....--))..))..)..))))))))(((((....(((((.....))))).))))) ( -25.50) >DroMoj_CAF1 179924 87 - 1 --GGGUCUAGUGGUGCA--AAGUGCAG----CAGCAGCUGAC--AAGCGG-CGCUAAGUGCUCUGCCCAUUAAAGUAUGCAAUCAUUUUGCGGUUAAC --.....((((((.(((--.((..(((----(.((.(((...--.))).)-))))..)..)).))))))))).....(((((.....)))))...... ( -28.40) >consensus AGGGGCGAAGUGUGUGU__GUGU______GU__GCGGAGAAAGGAGG__CUGCCUAAGUGCUUCGCCCAUUAAAGUAUGCAAUCAUUUUGCGGUUAGU ..(((((((((................................................))))))))).((((....(((((.....))))).)))). (-13.81 = -14.48 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:01 2006